BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0012.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2792 Non COG                                                       174   9e-44
PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas ae...    84   9e-17
HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus in...    63   2e-10
STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella ty...    58   8e-09

>RSc2792 Non COG
          Length = 155

 Score =  174 bits (440), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 91/146 (62%), Positives = 112/146 (76%), Gaps = 2/146 (1%)

Query: 5   LVIAALGSLVAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGVGTLGGA 64
           L++ ALG  + GCA   NS S Y + QAQ EQTVR G VES+RNV ID+  +GVGTL G 
Sbjct: 12  LLVTALG--LQGCATGSNSNSAYTSYQAQREQTVRFGTVESVRNVVIDREQTGVGTLAGG 69

Query: 65  ALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLSNRPGLEITVRLDNGELRAIT 124
           A+GGI + + IG GNG++AAGI+GA+AGG+ G+  E  ++ RPGLEITV+LDNGE RAIT
Sbjct: 70  AVGGIGSAAAIGRGNGSVAAGILGAIAGGIAGSAIEGQVNKRPGLEITVKLDNGEYRAIT 129

Query: 125 QDADEPFRVGERVRLLSNGRTTRVTH 150
           Q+ADE FR GERVRLLS+G  TRVTH
Sbjct: 130 QEADEAFRPGERVRLLSSGGVTRVTH 155


>PA1053 [M] COG3133 Outer membrane lipoprotein Pae Pseudomonas aeruginosa
          Length = 154

 Score = 84.3 bits (207), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 62/154 (40%), Positives = 96/154 (62%), Gaps = 7/154 (4%)

Query: 2   KKLLVIAALGSL---VAGCAVTPNSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGV 58
           K  L++A+  ++   + GC  +  +   Y+  +A+  QTVRMG ++++R V I+   + +
Sbjct: 3   KSALIVASFTAMALALGGCQ-SSLTGDTYSREEARTVQTVRMGTIQALRPVKIEGTKTPI 61

Query: 59  GTLGGAALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLSNRPGLEITVRLDNG 118
           G++ GA +GG+A  +  GGG G+  A I+GA+AGG+LG   E  L+   G+EITVR D+G
Sbjct: 62  GSIAGAGVGGVAGSAV-GGGKGSYVAAIIGAVAGGLLGAATEEGLTRTQGVEITVREDDG 120

Query: 119 ELRAITQDAD--EPFRVGERVRLLSNGRTTRVTH 150
             RA  Q  D  + FRVGERVR+L+   T+RV H
Sbjct: 121 STRAYVQQVDQGQIFRVGERVRILTVNGTSRVAH 154


>HI1579 [M] COG3133 Outer membrane lipoprotein Hin Haemophilus influenzae
          Length = 155

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 63/119 (52%), Gaps = 1/119 (0%)

Query: 14  VAGCAVTP-NSASVYNTRQAQGEQTVRMGVVESIRNVTIDKGSSGVGTLGGAALGGIAAG 72
           V GCA T   S  VY+  QA+  +++  G + S+R V I   + GV    G    G  AG
Sbjct: 16  VTGCANTDIFSGDVYSASQAKEARSITYGTIVSVRPVKIQADNQGVVGTLGGGALGGIAG 75

Query: 73  SNIGGGNGALAAGIVGALAGGVLGNQAEAHLSNRPGLEITVRLDNGELRAITQDADEPF 131
           S IGGG G   A +VGA+ G + G++ E  +S   G E+ ++ D+G+   + Q AD  F
Sbjct: 76  STIGGGRGQAIAAVVGAIGGAIAGSKIEEKMSQVNGAELVIKKDDGQEIVVVQKADSSF 134


>STM1445 [M] COG3133 Outer membrane lipoprotein Sty Salmonella typhimurium
           LT2
          Length = 155

 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 85/153 (55%), Gaps = 5/153 (3%)

Query: 1   MKKLLVIAALGSLVAGCAVTPN-SASVYNTRQAQGEQTVRMGVVESIRNVTIDKG--SSG 57
           +K++L ++ +G  +AGC    + S  VY   +A+  Q V  G + ++R V I  G  S+ 
Sbjct: 2   IKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGTIVNVRPVQIQGGDDSNV 61

Query: 58  VGTLGGAALGGIAAGSNIGGGNGALAAGIVGALAGGVLGNQAEAHLSNRPGLEITVRLDN 117
           +G +GGA LGG   G+ IGGG G   A   GA+AGGV G   ++ ++   G+E+ +R D+
Sbjct: 62  IGAIGGAVLGGF-LGNTIGGGTGRSLATAAGAVAGGVAGQGVQSAMNKTQGVELEIRKDD 120

Query: 118 GE-LRAITQDADEPFRVGERVRLLSNGRTTRVT 149
           G  +  + +  +  F  G+RV L SNG    V+
Sbjct: 121 GNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVS 153