BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0041.0010.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0240 [S] COG1289 Predicted membrane protein Bme Brucella mel...   122   5e-28

>BMEI0240 [S] COG1289 Predicted membrane protein Bme Brucella melitensis
          Length = 176

 Score =  122 bits (305), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/157 (43%), Positives = 94/157 (59%), Gaps = 5/157 (3%)

Query: 3   LHFINPRKNALVYLIKILSGCLILWYGLRAVGIAEPYWAMISLIIVTEPDMTVAKANFRA 62
           +HF NP K AL Y  +   GCLI W+ LR +GI  P W+M+++ IV++PD+    +  R 
Sbjct: 4   VHFSNPGK-ALHYASQTFIGCLISWFALRGIGIEHPIWSMMTVFIVSDPDIHTTLSLARV 62

Query: 63  RLINTLSGCIVSC--IALVLFGPTFLAMLAALTAAVVVAMLLQNYPSNWRLGPATVVILL 120
           R INT  GC +    I LV + P      AA+T  VVV  ++ NYPSNWRL PATVVI++
Sbjct: 63  RAINTAVGCTIGMVMIWLVGYSPVISLFAAAITVGVVV--MIDNYPSNWRLAPATVVIIM 120

Query: 121 SAAFSGQGLNEELHLALMRVGEVIVGSTVALLQTVVY 157
            A  + Q  ++EL LAL R  E+ +G  VAL    +Y
Sbjct: 121 DAGSAAQTSDQELWLALSRFLEITLGCVVALSVAWIY 157