BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0302.p (239 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1652 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 249 4e-66 AGl3449 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefac... 239 4e-63 mll8441 Non COG 231 1e-60 SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 218 7e-57 AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaci... 213 3e-55 >SMa1652 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 261 Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 135/242 (55%), Positives = 169/242 (69%), Gaps = 7/242 (2%) Query: 1 MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60 M IKLINPNTT +MTE M AR VAAAG+++ + G ASIE HYDEAL++ G++ E Sbjct: 1 MLIKLINPNTTSAMTELMGDTARTVAAAGSDIVLATSRSGAASIEGHYDEALSILGVIDE 60 Query: 61 IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120 I RG+ DAY+I CFGDPGL AARE+ PV+G+AE+AMH A+ +A SFS++TTL RT Sbjct: 61 IARGKP--ADAYIIGCFGDPGLLAAREITASPVLGVAESAMHAATFVATSFSIITTLERT 118 Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELEDPASDARARIT---EXA--EDGAEAIVLG 175 ++ L YGMQ CR+VRA ++ VLELE +S A A I E A ED A+AIVLG Sbjct: 119 RIISERLVRSYGMQNHCRSVRATDVPVLELERSSSTADAAILAECEKALIEDRAQAIVLG 178 Query: 176 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGELARPLPKAYHGLLRE 235 CAGM+ L + +G PVIDGV AAVK AE +V +GL T+K G+LA PLPKAY G L E Sbjct: 179 CAGMSNLVERLQHRLGVPVIDGVAAAVKFAEGIVGMGLRTSKVGDLAYPLPKAYAGKLAE 238 Query: 236 FA 237 +A Sbjct: 239 YA 240 >AGl3449 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 247 Score = 239 bits (610), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 130/241 (53%), Positives = 158/241 (65%), Gaps = 6/241 (2%) Query: 1 MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60 MRI ++NPNTT SMT + A +V TE+ GV+ MGP SIE +YDE AVPGLL E Sbjct: 1 MRILVVNPNTTRSMTATIADAAMRVVGRDTEILGVTSSMGPVSIEGYYDEVFAVPGLLLE 60 Query: 61 IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120 + + G DA VIACF D GL AAR PVIG+ EAA+ + IA F++VTT+ R+ Sbjct: 61 LAKAPALGVDAAVIACFDDTGLDAARAFCDIPVIGLCEAAVSATAFIAQKFTIVTTMERS 120 Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELEDPASDARARITE-----XAEDGAEAIVLG 175 HL RYGM C NVRA +I VL LEDPAS+AR R+ + ED AEAIVLG Sbjct: 121 RLPLEHLVHRYGMSARC-NVRAADIPVLSLEDPASNARERLRQEIALALKEDRAEAIVLG 179 Query: 176 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGELARPLPKAYHGLLRE 235 CAGMA+L A + + G PV+DGV AAVK AESLV++GL TAK G A+P+ K YHGLL Sbjct: 180 CAGMADLTAELRAEFGVPVVDGVAAAVKQAESLVSMGLSTAKSGAYAKPVAKPYHGLLEA 239 Query: 236 F 236 F Sbjct: 240 F 240 >mll8441 Non COG Length = 250 Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 137/242 (56%), Positives = 164/242 (67%), Gaps = 6/242 (2%) Query: 1 MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60 ++I ++NPNTT SMTE + A AR VA A TE+ V+ GP SIE +YDEALAVPGLL E Sbjct: 3 VQILVVNPNTTASMTETIGAAARAVAGAWTEIIAVTSSTGPDSIEGYYDEALAVPGLLME 62 Query: 61 IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120 I GER G A VIACF D GL AAR +A PVIGI EAA+ MAS IA F+VVTT R+ Sbjct: 63 IAAGERRGAQAAVIACFDDTGLDAARAMANIPVIGICEAALSMASFIAQRFTVVTTTERS 122 Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELEDPASDARARITE-----XAEDGAEAIVLG 175 L +RYGM R VRA +I VL LEDPAS A ++ + ED AEAIVLG Sbjct: 123 RVPVEGLVQRYGMAGRAR-VRAADIPVLALEDPASGATGKLRDEIARAVEEDRAEAIVLG 181 Query: 176 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGELARPLPKAYHGLLRE 235 CAGMA+L + D G PVIDGV AA+K AE+L+ALGL T+KRG A PL K+Y G+L+ Sbjct: 182 CAGMADLAHQLQADFGLPVIDGVGAAIKQAEALIALGLSTSKRGAYASPLAKSYRGMLKS 241 Query: 236 FA 237 F+ Sbjct: 242 FS 243 >SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 241 Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 125/236 (52%), Positives = 152/236 (64%), Gaps = 5/236 (2%) Query: 1 MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60 M I LINPN+T SMT A V A T V+ +P PASIE DEA++VPG+L E Sbjct: 1 MHIHLINPNSTASMTAQALESALLVKHAHTHVSASNPTDTPASIEGGADEAMSVPGMLAE 60 Query: 61 IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120 I +GE G DAYVIACF DPGL AARE+A+GPVIGI +AA+ +A I+ FSV+TTL R+ Sbjct: 61 IRQGEAQGVDAYVIACFDDPGLHAAREVAKGPVIGICQAAVQVAMTISRRFSVITTLPRS 120 Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLEL-EDPASDARARITE----XAEDGAEAIVLG 175 + L YG +R CR VRA ++ VL L EDP R + E AEDGAEAIVLG Sbjct: 121 VPIIEDLVSDYGAERHCRKVRAIDLPVLALEEDPQRAERLLLKEIEIAKAEDGAEAIVLG 180 Query: 176 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAKRGELARPLPKAYHG 231 CAGM+ LC + + G PVIDGVTAAVK+AE+L+ G T+K A P KA G Sbjct: 181 CAGMSSLCDRLQKATGVPVIDGVTAAVKMAEALLGAGYATSKVNTYAYPRIKAAAG 236 >AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 213 bits (543), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 120/222 (54%), Positives = 147/222 (66%), Gaps = 5/222 (2%) Query: 1 MRIKLINPNTTWSMTEAMTACARQVAAAGTEVTGVSPEMGPASIESHYDEALAVPGLLQE 60 M I+LINPN+T SMT A +V T V+ +P P SIE DEA+AVPGLL E Sbjct: 4 MHIRLINPNSTASMTAQALDSALRVKQKDTHVSAANPVDTPVSIEGQADEAMAVPGLLAE 63 Query: 61 IERGERDGYDAYVIACFGDPGLSAARELAQGPVIGIAEAAMHMASLIAPSFSVVTTLART 120 I +GE G DAYVIACF DPGL AARE+A+GPVIGI +AA+ +A I+ FS++TTL R+ Sbjct: 64 IRKGEGHGVDAYVIACFDDPGLHAAREVARGPVIGICQAAVQVAMTISRRFSIITTLPRS 123 Query: 121 SGMAWHLAERYGMQRFCRNVRACEIAVLELEDPASDARA---RITEXA--EDGAEAIVLG 175 + L E YG QR+CR VRA ++ VL LE+ A A R E A ED AEAI+LG Sbjct: 124 IPIIEDLVEDYGAQRYCRKVRAIDLPVLGLEEDPEVAEALLRREIEAAKREDAAEAIILG 183 Query: 176 CAGMAELCAAIGRDIGAPVIDGVTAAVKLAESLVALGLGTAK 217 CAGM+ LC + G PVIDGVTAA+KLAE+LV G T+K Sbjct: 184 CAGMSSLCDRLRDATGVPVIDGVTAAIKLAEALVGAGYTTSK 225