BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0300.p (245 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2117 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 311 1e-84 PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 171 1e-42 AGpA592 [K] COG1802 Transcriptional regulators Atu Agrobacterium... 125 6e-29 BMEII0807 [K] COG1802 Transcriptional regulators Bme Brucella me... 125 8e-29 RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia sol... 124 2e-28 >RSc2117 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 250 Score = 311 bits (796), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 152/219 (69%), Positives = 176/219 (80%), Gaps = 1/219 (0%) Query: 27 VEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRG 86 VEERMY +IYDAIMEHRLPPRTKLTE LC+IY TARHTVRKV +RLAA+G+VDLE NRG Sbjct: 28 VEERMYHEIYDAIMEHRLPPRTKLTEHALCEIYATARHTVRKVFSRLAADGLVDLEPNRG 87 Query: 87 AFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQ-IAGLRRMVEEERDCYLNGDRPR 145 AFIA+PS E MFELR ILE AVL+K+G +A + +A L V EER +++ DRPR Sbjct: 88 AFIAAPSIDEAHAMFELRQILERAVLDKVGRSASPKAAVAPLLARVNEERQAFVSHDRPR 147 Query: 146 WIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALE 205 WIRLSA+FH+ALAE GN L+VE +R+LVSRTTLMIA EAPGHNACSFDEH +L ALE Sbjct: 148 WIRLSAEFHVALAEQAGNPLVVEIMRRLVSRTTLMIASVEAPGHNACSFDEHLDILRALE 207 Query: 206 KGDIKAAQAHMAHHLHLCEDRVRPDADDQFDLRAVLGKG 244 +GD+ AAQAHMA HL C DRVRP+A FDLRAVLG+G Sbjct: 208 RGDVGAAQAHMAQHLQCCADRVRPEAPADFDLRAVLGRG 246 >PA1520 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 259 Score = 171 bits (433), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 94/215 (43%), Positives = 135/215 (62%), Gaps = 1/215 (0%) Query: 28 EERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGA 87 +E +Y I+DAI+E RL P TKL+E+ L +I+ +R +R+ L+RLA E +V L NRGA Sbjct: 24 DEIVYAHIFDAILEQRLAPGTKLSEEALGEIFGVSRTIIRRALSRLAHEQVVLLRPNRGA 83 Query: 88 FIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWI 147 +ASPS E R + R +E A+ E A ++A LR MV +E+ + GDR I Sbjct: 84 VVASPSIDEARQILFARRTVERAITELATDNATAERLAELREMVVQEQSSFARGDRGAGI 143 Query: 148 RLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKG 207 RLS +FHL LAE+ NA LV R LVS+T+L+IA+ E+ G + CSFDEH +L+A+EKG Sbjct: 144 RLSGEFHLKLAEMARNAPLVSFQRSLVSQTSLIIAQYESGGRSHCSFDEHNEILDAIEKG 203 Query: 208 DIKAAQAHMAHHLHLCEDRVRPDADD-QFDLRAVL 241 D + A M HH+ + ++ ++D+ DL AV Sbjct: 204 DKERAVTLMMHHMEHIDSKLNLESDNASGDLHAVF 238 >AGpA592 [K] COG1802 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 249 Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 77/217 (35%), Positives = 117/217 (53%), Gaps = 2/217 (0%) Query: 27 VEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRG 86 V ER+ + +AI E L P TK+ E + + +R VR L L ++ +++ + NRG Sbjct: 29 VSERIRTTLANAIGEGALKPGTKILEDAIADHFGVSRTVVRGALGVLESDHLLERKRNRG 88 Query: 87 AFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRW 146 F+A P E R +FE R +EHA+L+ + A T Q+ L ++ +EE + +GD Sbjct: 89 TFVAEPGIEEARALFEARRKIEHAILDLVMARATTEQLDALEKLTDEEEHIHHHGDEKSK 148 Query: 147 IRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEK 206 LS +FH+ LAEL N ++ ETL K+V+R +L++A + C D H ++ AL+ Sbjct: 149 TVLSGKFHIVLAELGVNVVMTETLSKIVARLSLVMALYGEDKKDDCGADHHRMIVAALKA 208 Query: 207 GDIKAAQAHMAHHLHLCEDRVRPDA--DDQFDLRAVL 241 D+ AQ M HHL E RVR A D+ AVL Sbjct: 209 KDLAKAQQLMDHHLADIEGRVRLTAGQGDRHTFMAVL 245 >BMEII0807 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 235 Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 111/203 (54%) Query: 18 ARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEG 77 A+E N+ A +YQ + +A++ H L P TKL E L IY +R VR L LA + Sbjct: 9 AKENSNSGARWFPVYQGLCEAVVGHSLLPGTKLPEDELASIYTVSRAVVRSALQALAHDR 68 Query: 78 MVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDC 137 +V LE NRGAF+A PSP E R++FE R+++E + A +QI LR+ +E E D Sbjct: 69 LVRLEPNRGAFVAEPSPEEAREVFEARSLIEPEIAALAAKKATPKQIEELRQHLEREHDA 128 Query: 138 YLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEH 197 G IRLSA FH LA++ G+++ + +L+ R++L+IA C D H Sbjct: 129 LQAGHDSDAIRLSALFHSYLAKIAGHSIFASFVSELLPRSSLIIALYWQRREITCQNDAH 188 Query: 198 ETVLEALEKGDIKAAQAHMAHHL 220 ++ A+EK D A A M H+ Sbjct: 189 HALVNAIEKHDAHEAAALMKTHI 211 >RSc3276 [K] COG1802 Transcriptional regulators Rso Ralstonia solanacearum Length = 229 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/192 (35%), Positives = 113/192 (58%) Query: 29 ERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTARHTVRKVLARLAAEGMVDLEANRGAF 88 E + +DI AI+ HRLPP TKL E+ L ++Y +R +R L LA + ++ +E +RGAF Sbjct: 13 EGIAEDIAQAIVAHRLPPGTKLREEALARVYHVSRTKIRAALLMLAKDKLIRIEPDRGAF 72 Query: 89 IASPSPAEVRDMFELRNILEHAVLEKLGHTAGTRQIAGLRRMVEEERDCYLNGDRPRWIR 148 +A P E R++F +R +LE A+ + A A L + + EE + + D PR R Sbjct: 73 VARPDETEAREVFAVRRVLEVALAREFIARATPADYARLEQHLAEEHEVAASTDVPRRNR 132 Query: 149 LSAQFHLALAELTGNALLVETLRKLVSRTTLMIAKTEAPGHNACSFDEHETVLEALEKGD 208 L A FHL +A++ GN++L E LR+L +R++++ ++ S +EH L+A ++GD Sbjct: 133 LMADFHLLMADVVGNSVLKEMLRELSARSSVITMMYQSTYDAVRSSEEHTAFLDAAKRGD 192 Query: 209 IKAAQAHMAHHL 220 ++ A A M H+ Sbjct: 193 VEGAIALMEEHM 204