BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0288.p (260 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transd... 354 1e-97 RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transd... 312 6e-85 YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transd... 305 7e-83 mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transd... 211 9e-55 SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transd... 207 1e-53 >AGc2566 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 261 Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 174/257 (67%), Positives = 207/257 (80%), Gaps = 1/257 (0%) Query: 5 KLLLGLMAGAMMFSAS-VAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDV 63 +LLL + A ++ S A ADAL DI GT+RVAVP DFPPFGSV D+ PQG DIDV Sbjct: 5 RLLLAIAAVSVTLGFSPAAFADALGDISSRGTIRVAVPQDFPPFGSVGTDMAPQGYDIDV 64 Query: 64 ATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNG 123 A LI +KLGVKVEL+PV+SANR+PYL T KVDLVISS+GKN +REKVIDFS AYAPFFNG Sbjct: 65 ANLIGEKLGVKVELVPVTSANRVPYLQTNKVDLVISSLGKNPDREKVIDFSTAYAPFFNG 124 Query: 124 VFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQV 183 VF P ++V A DL+GKTI VTRG+VEDLELTK+ PA T+KRYEDNN TIS+FL+GQV Sbjct: 125 VFAPDSVTVAKAEDLSGKTIGVTRGAVEDLELTKVAPADTTIKRYEDNNGTISAFLAGQV 184 Query: 184 QLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGS 243 + VATGNVVAAAI+A+NPPK+PE KFLIK+SPC+IGLNK + L +KV+AI+A +K DGS Sbjct: 185 EAVATGNVVAAAILAKNPPKRPELKFLIKNSPCYIGLNKEQPALLEKVNAIIATAKTDGS 244 Query: 244 LSAISQKWLGMPLPAGL 260 L+ I+QKWL LP L Sbjct: 245 LNTIAQKWLKTDLPKDL 261 >RSc2103 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 267 Score = 312 bits (799), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 149/239 (62%), Positives = 189/239 (79%) Query: 22 AHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATLIAKKLGVKVELIPVS 81 AHADAL +IQK G +RVA+P DFPPFGS+ DLK QG DID+A L+AK+LGVK EL+PV+ Sbjct: 29 AHADALANIQKAGVIRVAIPNDFPPFGSLGTDLKLQGYDIDMANLVAKELGVKAELVPVT 88 Query: 82 SANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFGPADLSVKSAADLAGK 141 S NRIP+LTT KVD+VISS+GKNAER KVIDF+ AYAPF V+GP D+S+K+ ADLAGK Sbjct: 89 STNRIPFLTTGKVDVVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKTPADLAGK 148 Query: 142 TIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLVATGNVVAAAIIARNP 201 TI VTRGS EDL LT + PASAT+KRYEDNN+T S+L GQVQLV GN+VA A+ R Sbjct: 149 TIGVTRGSTEDLALTAVAPASATIKRYEDNNATAQSYLIGQVQLVTLGNIVANAVNERTR 208 Query: 202 PKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSAISQKWLGMPLPAGL 260 ++ + KF ++D+PC++G+ KGE L +KV+A + + K DG L+ +SQ+W+ MPLPA L Sbjct: 209 LRQLDVKFPVEDTPCYVGVAKGEPALLEKVNAAITKLKSDGRLNDLSQRWIKMPLPAKL 267 >YPO3257 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Ype Yersinia pestis Length = 262 Score = 305 bits (781), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 145/260 (55%), Positives = 194/260 (74%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLD 60 M + K +L L A ++ A AD L+ IQ+ G LRVAVP DFPPFGSV DL+PQG D Sbjct: 1 MNIKKRMLWLWAVLVLVQAPAVLADQLEKIQQRGVLRVAVPQDFPPFGSVGTDLQPQGYD 60 Query: 61 IDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPF 120 ID+A +A K+ +K++L+ V+SANR+PYL T KVDLVISS+GKN EREK I FS AYAPF Sbjct: 61 IDMAQYLADKMKLKLQLVSVTSANRVPYLQTDKVDLVISSLGKNPEREKAIAFSRAYAPF 120 Query: 121 FNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLS 180 F GVFG D +K LAGKTI VTRG+VED+ L++I P +A ++RYEDNN+T+S++LS Sbjct: 121 FLGVFGAKDDELKQPEQLAGKTIGVTRGAVEDMVLSEIAPKAAQIRRYEDNNTTLSAYLS 180 Query: 181 GQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKK 240 GQV +ATGN+V +A+ +NP + P KF++KDSPC+IGL +GE L+ KVDA++ ++ + Sbjct: 181 GQVNYLATGNLVISALARQNPKQAPVAKFMLKDSPCYIGLRQGEPALKAKVDALIGDALQ 240 Query: 241 DGSLSAISQKWLGMPLPAGL 260 D +L+ +S+KWL PLPA L Sbjct: 241 DNTLNGLSEKWLKAPLPADL 260 >mlr4897 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 269 Score = 211 bits (538), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 163/250 (65%), Gaps = 1/250 (0%) Query: 7 LLGLMAGAMMFSASVAHADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVATL 66 +L L A + + A+ADAL DI K GT+ V V ADFPPF S AD+ +G D+DVA Sbjct: 14 ILVLGAAGLGIATQAANADALADITKAGTINVGVFADFPPFSSASADMSLKGYDMDVAQY 73 Query: 67 IAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVFG 126 IA L VK+ + V+ NRIPYL +VD+++S +G + ERE+VIDF+AAYAP++ V G Sbjct: 74 IADTLKVKLNPVAVTGQNRIPYLNDHRVDILMS-VGYSKEREQVIDFAAAYAPYYIAVIG 132 Query: 127 PADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQLV 186 PA +SVK DLA K+IAV RG++ED LT+ PASA +KR+++ NS I +F+SGQ QL+ Sbjct: 133 PAAMSVKGKEDLADKSIAVNRGTLEDTSLTEAAPASADIKRFDNYNSVIQAFISGQTQLM 192 Query: 187 ATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLSA 246 GN V A ++A+ KPE KF + SP IGLNK E L+ V+ +A+ DG L Sbjct: 193 VVGNDVGAQVLAKQDVLKPEQKFQLLTSPSHIGLNKNEDGLKKAVNDAIAKMLADGKLDE 252 Query: 247 ISQKWLGMPL 256 S+ WL PL Sbjct: 253 SSKAWLKTPL 262 >SMa0082 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Sme Sinorhizobium meliloti Length = 271 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 113/259 (43%), Positives = 162/259 (62%), Gaps = 3/259 (1%) Query: 1 MKLTKLLLGLMAGAMMFSASVAHADA--LDDIQKHGTLRVAVPADFPPFGSVDADLKPQG 58 M +++ + + GA + + VA A A ++ I+ GT++V + DFPPFG +DA+ +P G Sbjct: 7 MNISRRIAISVLGAAIVAGLVAPAAAQTVETIKSAGTVKVGMLVDFPPFGIMDANNQPDG 66 Query: 59 LDIDVATLIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYA 118 D DVA L+AK+LGV+V ++PV+ NRIPYL + +VDL+++S+G ER K +DFS YA Sbjct: 67 YDADVAKLLAKELGVEVTIVPVTGPNRIPYLQSNQVDLLVASLGITEERAKNVDFSQPYA 126 Query: 119 PFFNGVFGPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSF 178 GVFG ADL+V DLAGKTI V R S +D TKI P A ++R++D+ S + + Sbjct: 127 GISIGVFGAADLAVTKPEDLAGKTIGVARASTQDTATTKIAPQDANIQRFDDDASAVQAL 186 Query: 179 LSGQVQLVATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAES 238 LSGQV+L+ NVVAA I A P + K + I + KG ++ V+ L + Sbjct: 187 LSGQVELIGVSNVVAAQIEAA-APGRFNQKLQLSQQVQGIAVRKGSSEMLKFVNGFLDKV 245 Query: 239 KKDGSLSAISQKWLGMPLP 257 K DG L+AI +KWLG PLP Sbjct: 246 KADGQLNAIHEKWLGSPLP 264