BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0275.p (298 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1229 [K] COG2207 AraC-type DNA-binding domain-containing prote... 276 3e-74 AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing prot... 266 3e-71 mll3235 [K] COG2207 AraC-type DNA-binding domain-containing prot... 256 3e-68 yeaM [K] COG2207 AraC-type DNA-binding domain-containing protein... 239 4e-63 ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing protei... 237 2e-62 >PA1229 [K] COG2207 AraC-type DNA-binding domain-containing proteins Pae Pseudomonas aeruginosa Length = 268 Score = 276 bits (707), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 134/249 (53%), Positives = 179/249 (71%), Gaps = 4/249 (1%) Query: 12 DPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSAVWI 71 DPD L AL++ ++ E P+H HRKGQLVVA RG +TC G+W+VP VWI Sbjct: 14 DPDALGQPALALQLEARHNDTEVPVHRHRKGQLVVACRGGITCTVPDGLWMVPAGFGVWI 73 Query: 72 PPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLAEQRQDYAPHER 131 P G+ HSNRVT +G++CFLF+ P AA +P CCTLALSPL++++I HL+ Q QDY PH+ Sbjct: 74 PGGIAHSNRVTANGKVCFLFVEPGAARLPSDCCTLALSPLVLELILHLSAQPQDY-PHDG 132 Query: 132 -TARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRSTVAQWGQRHAMS 190 ARLA VL+E LE + L+LP P + LR IA L P DR+++A+W +R AMS Sbjct: 133 PLARLAGVLLELLEQAPTEQ--LYLPLPDNRGLRRIADELTRAPGDRASMAEWARRVAMS 190 Query: 191 ERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMFRKT 250 ERS AR V+ ETGM+FG+WR+Q+ +++ALQ+L++G SVQR ++ LGY+SVS+FI MFRK Sbjct: 191 ERSLARMVRRETGMTFGQWRQQLQIIIALQQLSAGVSVQRTAEILGYESVSSFIGMFRKA 250 Query: 251 LGKPPARYM 259 LG PPARY+ Sbjct: 251 LGSPPARYV 259 >AGpA810 [K] COG2207 AraC-type DNA-binding domain-containing proteins Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 268 Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 133/260 (51%), Positives = 178/260 (68%), Gaps = 10/260 (3%) Query: 3 TLYASLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWI 62 +L +L +HD + AAV ++R+ SQ+ERE P H HRKGQLV+ LRG VTC GMW+ Sbjct: 11 SLSGALADHDLENSSAAVRSVRIDVSQNEREAPEHQHRKGQLVMPLRGGVTCRVPSGMWM 70 Query: 63 VPPQSAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLAEQ 122 VPP VW+P G+ HSN T + +L FLFI P AA +P +CCTL+LSPL+ ++I LA+Q Sbjct: 71 VPPHCGVWVPGGMLHSNVATANARLFFLFIEPGAADLPNRCCTLSLSPLVRELIIELADQ 130 Query: 123 RQDYAPHER---TARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRST 179 + T L+A+ +EH LHLP RL IA LA+ P+DRST Sbjct: 131 SEVATADSELMTTLLLSALSRMPVEH-------LHLPLTDEPRLARIASELADDPSDRST 183 Query: 180 VAQWGQRHAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDS 239 +AQW +R AMSE S AR VQ +TG++FGRWR+Q+ L++A++ LASG++VQ+VS DLGY+S Sbjct: 184 MAQWARRVAMSENSLARLVQHQTGLTFGRWRQQLQLIIAIRSLASGATVQQVSGDLGYES 243 Query: 240 VSAFITMFRKTLGKPPARYM 259 VSAFITMF+K LG P+RY+ Sbjct: 244 VSAFITMFKKALGTSPSRYL 263 >mll3235 [K] COG2207 AraC-type DNA-binding domain-containing proteins Mlo Mesorhizobium loti Length = 268 Score = 256 bits (655), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/253 (50%), Positives = 176/253 (69%), Gaps = 7/253 (2%) Query: 9 VEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQSA 68 ++ D D + A A+RV ++ + E H HRKGQLV AL G+VTC G+W+VPP Sbjct: 10 LDFDVDDVLAPAIAIRVDVTETKAEVSQHWHRKGQLVFALSGSVTCRVPSGLWMVPPHCG 69 Query: 69 VWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLAEQRQDYAP 128 VW+P + HSN T + ++ F++I P AA +P++CCTL++SPLL ++I L+ D AP Sbjct: 70 VWVPSRMQHSNIATANARIFFVYIEPGAAELPDRCCTLSISPLLRELIIELS----DCAP 125 Query: 129 HE-RTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRSTVAQWGQRH 187 + R A L +VL+ EL L HLP RL+ IA LA PADRST+A+WG+R Sbjct: 126 DDARCAFLGSVLLAELPDMPVQQL--HLPISSEPRLKRIAEALANDPADRSTLAEWGKRV 183 Query: 188 AMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITMF 247 A+SE S AR V ETG+SFGRWR+Q+HL++A++ LASG+SVQRVS DLGY+SV+AFITMF Sbjct: 184 ALSESSLARLVVKETGLSFGRWRQQLHLIVAIRELASGASVQRVSGDLGYESVTAFITMF 243 Query: 248 RKTLGKPPARYMA 260 +K LGKPPA+Y++ Sbjct: 244 KKALGKPPAQYLS 256 >yeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins Eco Escherichia coli K12 Length = 273 Score = 239 bits (611), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/255 (45%), Positives = 163/255 (63%), Gaps = 2/255 (0%) Query: 7 SLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQ 66 +L ++PDR A A +H DE +P+H HRKGQL++AL GA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLAEQRQDY 126 AVWIP GV HSN+VT + +LCFLFI P A +MP CCTL +SPL ++I LA + Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCCTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRSTVAQWGQR 186 T RL VL +EL + L L + + H ++R + +A+ P + + QW Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQLHLPVSS--HPKIRTMVEMMAKGPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGYDS +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FRKTLGKPPARYMAQ 261 F+K LG+ P RY+A+ Sbjct: 244 FKKGLGQTPGRYIAR 258 >ZyeaM [K] COG2207 AraC-type DNA-binding domain-containing proteins EcZ Escherichia coli O157:H7 EDL933 Length = 273 Score = 237 bits (605), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 117/254 (46%), Positives = 162/254 (63%), Gaps = 2/254 (0%) Query: 7 SLVEHDPDRLDAAVTALRVHTSQDERETPLHSHRKGQLVVALRGAVTCETAQGMWIVPPQ 66 +L ++PDR A A +H DE +P+H HRKGQL++AL GA+TC +W+VPPQ Sbjct: 6 NLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLILALHGAITCTVENALWMVPPQ 65 Query: 67 SAVWIPPGVPHSNRVTLDGQLCFLFIAPQAASMPEQCCTLALSPLLVQMICHLAEQRQDY 126 AVWIP GV HSN+VT + +LCFLFI P A +MP C TL +SPL ++I LA + Sbjct: 66 YAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTCYTLKISPLCRELILTLANRTTTQ 125 Query: 127 APHERTARLAAVLVEELEHSQRHALPLHLPAPQHSRLRAIARHLAEHPADRSTVAQWGQR 186 T RL VL +EL + L L + + H ++RA+ +A+ P + + QW Sbjct: 126 RAEPMTRRLIQVLFDELPQQPQQQLHLPVSS--HPKIRAMVEMMAKEPVEWGALGQWAGF 183 Query: 187 HAMSERSFARFVQAETGMSFGRWRRQIHLMLALQRLASGSSVQRVSQDLGYDSVSAFITM 246 AMSER+ AR + ETG+SF +WR+Q+ L++ALQ L G +VQ+V+ LGYDS +AFITM Sbjct: 184 FAMSERNLARLIVKETGLSFRQWRQQLQLIMALQGLVKGDTVQKVAHTLGYDSTTAFITM 243 Query: 247 FRKTLGKPPARYMA 260 F+K LG+ P RY+A Sbjct: 244 FKKGLGQTPGRYIA 257