BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0270.p (241 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella me... 139 7e-33 AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 136 3e-32 SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobiu... 133 3e-31 AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 133 4e-31 AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium ... 129 8e-30 >BMEII0071 [K] COG2186 Transcriptional regulators Bme Brucella melitensis Length = 270 Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 136/226 (60%), Gaps = 11/226 (4%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L + +ARQ+ + I G F GSKLP+E L+ ++GVSR VVREA+++LK +G+VE R GS Sbjct: 40 LPEEIARQIEKRILDGEFSVGSKLPSERELSVEYGVSRPVVREALSQLKLDGLVEARAGS 99 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 GVFV +++ K RI V +++ Q++EL AIE AA R+ EDL+ I+ AL Sbjct: 100 GVFVIDESNQKAFRIQPLVVEEAQSLEQLMELLVAIEVAATRIAAVNRTPEDLKQIKRAL 159 Query: 130 AQIGVDVAAGGD--GVAADVAFHRALAQATRNPYFI---KTLEFLSQY-LEAATAVTRGN 183 IG++ A D G D AFH A+ AT NP+FI K LE+ +++ + A TR N Sbjct: 160 --IGLEYAIISDKLGDEEDYAFHDAIVIATHNPHFIALCKHLEYGARHVIRQARTNTRSN 217 Query: 184 EARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 +D V++EH+AI EAI GD A AA+ H+ NA +R+ Sbjct: 218 ---LKDMLDAVQDEHKAIYEAIELGDPEQAGIAAERHLRNATQRMK 260 >AGc4967 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 238 Score = 136 bits (343), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 84/222 (37%), Positives = 129/222 (58%), Gaps = 5/222 (2%) Query: 10 LSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGS 69 L +A ++ I+ G +LPTE VLA+ FGVSR+V+REAIA+L++EG VE RQG Sbjct: 14 LPGRIAAEIAREINDSQLGPGDRLPTEHVLAKTFGVSRSVIREAIAQLRNEGFVETRQGV 73 Query: 70 GVFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAAL 129 G FVT+ +RI+ + ++ PE +++LR ++E + A AA E L+ + A+ Sbjct: 74 GAFVTDPRQRLSIRIEQSTLNDPENFRDLMQLRMSLEIDAAGLAALHHKPEHLEKFDKAI 133 Query: 130 AQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAA--TAVTRGNEARY 187 + + DGV AD+ FHR +AQAT N YF+ L F++Q + +A TA +R A Y Sbjct: 134 YGMRNAIEWSKDGVEADLDFHRTMAQATGNEYFLIFLGFIAQRISSAINTAFSR---AVY 190 Query: 188 EDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLS 229 + EH + +AI + + AR+A + H+ AARRL+ Sbjct: 191 GEILEITINEHVVLRDAIASRNVALARDAMRQHILGAARRLN 232 >SMb20106 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 243 Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/229 (40%), Positives = 135/229 (58%), Gaps = 13/229 (5%) Query: 9 ALSDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQG 68 + +D V ++L +I G F G++LPTE LA++FGVSR VVREA+ARL+ +G+VE R+G Sbjct: 18 SYADQVYGRILHDILNGIFQPGARLPTENELAERFGVSRPVVREALARLRVDGLVEARRG 77 Query: 69 SGVFVTEQAGIK-PLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEA 127 SG +V + P D ++S L+ ELR +E + AA AA+RR+ + L AI Sbjct: 78 SGTYVLSRPSQDLPNLADLEDISR---FLRYQELRFYVEGQAAALAAERRTEKQLAAILE 134 Query: 128 ALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLE----FLSQYLEAATAVTR-G 182 A +V G +D FH A+ + T N +F K LE L+ ++ + A+TR G Sbjct: 135 AHEAFAHEVGRGAFLPESDRRFHLAICEGTGNEFFAKALEGPEVSLTSFMNVSLALTRSG 194 Query: 183 NEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQG 231 ++AR +R+V EH IVEAIR D + AR A +TH+ NA RR++ G Sbjct: 195 SQAR----ARRVIAEHAEIVEAIRTKDAVWARVAMETHIINARRRMTDG 239 >AGl3331 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 245 Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 130/220 (59%), Gaps = 10/220 (4%) Query: 14 VARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSGVFV 73 V+ +L I G + G +LP+EA + Q+FGVSRTVVREA+A L+ +G+VEPRQG+GVFV Sbjct: 21 VSEELRSQIAKGRYKTGDRLPSEAQMTQEFGVSRTVVREAVASLRSDGLVEPRQGAGVFV 80 Query: 74 TEQAGI--KPL-RIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAALA 130 E A + +P +D VSS +++++ELR A+E + A AA RRS + I A Sbjct: 81 LEPAPVERRPFHNVDLARVSS---LIEMLELRTAVEGDAAGLAAIRRSPAQEEKIIEAFD 137 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVT-RGNEARYE- 188 A G AD AFH A+A+AT NP F + L+ L + AV G E Sbjct: 138 AFRASAARGMPTAEADFAFHIAVAEATNNPRFSEFLQVLGPTVIPRRAVAENGAETVLSP 197 Query: 189 -DFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR 227 D SR V EHEAI+ AI+ G+E AAR+A ++H+ ++ R Sbjct: 198 ADLSRLV-GEHEAILIAIQDGNEDAARSAMRSHLKSSQTR 236 >AGl518 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 237 Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/230 (39%), Positives = 131/230 (56%), Gaps = 17/230 (7%) Query: 15 ARQLLENIDA----GAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSG 70 A+Q+++N+ A G G ++PTE L + +GVSRTVVREAIA L+ G V P QG G Sbjct: 13 AQQIIDNLSAEIRSGKLKNGDQVPTEPQLERTYGVSRTVVREAIADLRSAGYVVPIQGKG 72 Query: 71 VFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRRAIEAEVAAQAAKRRSAEDLQAIEAALA 130 VFV+ + +++ +EV + L+++E R A E E AA AA RR+A+ AI AA Sbjct: 73 VFVSNASEWTGVKLTQSEVGTIAETLEMLEFRLATEGEAAAIAAYRRTAQQEAAISAAHR 132 Query: 131 QIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEFLSQYLEAATAVTRGN-----EA 185 ++ + AG V AD FH A+A AT N ++ LE L Q+ + ++ RG E Sbjct: 133 KMARAIDAGETTVDADYEFHSAIAIATNNRFY---LEALRQF--GSRSIPRGQFPTLPET 187 Query: 186 RYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARR---LSQGQ 232 ++ R+V+ EHEAI+ AI D AAR A + HM + RR LS+ Q Sbjct: 188 GNANYLRKVQAEHEAILRAIVEQDPEAARKAMREHMLASQRRYRLLSEAQ 237