BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0260.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3141 [MG] COG1086 Predicted nucleoside-diphosphate sugar epime...    88   5e-18
NMB1822 [MG] COG1086 Predicted nucleoside-diphosphate sugar epim...    84   1e-16
NMA0637 [MG] COG1086 Predicted nucleoside-diphosphate sugar epim...    80   1e-15
VC0260 [MG] COG1086 Predicted nucleoside-diphosphate sugar epime...    68   5e-12
RSp1004 [MG] COG1086 Predicted nucleoside-diphosphate sugar epim...    63   1e-10

>PA3141 [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases Pae
           Pseudomonas aeruginosa
          Length = 665

 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 55/85 (64%)

Query: 1   LRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLM 60
           LRPGEKLYEELLIGDN  PT H  IM+A+EE + W   +  L  L  A+  +D   +R +
Sbjct: 580 LRPGEKLYEELLIGDNVNPTDHPMIMRANEEHLSWEAFKVVLEQLLAAVEKDDYSRVRQL 639

Query: 61  MEKLVTGYTPSDEIVDWVYLEQEAE 85
           + + V+GY P  EIVDW+Y ++  E
Sbjct: 640 LRETVSGYAPDGEIVDWIYRQRRRE 664


>NMB1822 [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases Nme
           Neisseria meningitidis MC58
          Length = 636

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 54/89 (60%)

Query: 1   LRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLM 60
           LRPGEKLYEELLIGDN + T H RIM A+E  +PW EL A L  +  A +  D   IR +
Sbjct: 548 LRPGEKLYEELLIGDNVRKTGHPRIMTANETMLPWHELSALLDRIRAACDRYDQQAIRTL 607

Query: 61  MEKLVTGYTPSDEIVDWVYLEQEAEAQAL 89
           +    TG+ PSD I D +++ +     A+
Sbjct: 608 LINAPTGFAPSDGICDLLWVRETHRKNAV 636


>NMA0637 [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases NmA
           Neisseria meningitidis Z2491
          Length = 636

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 53/89 (59%)

Query: 1   LRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLM 60
           LRPGEKLYEELLI DN + T H RIM A E  +PW EL A L+ +  A +  D   IR +
Sbjct: 548 LRPGEKLYEELLIDDNVRKTGHPRIMTADEAMLPWHELSALLNRIRAACDRYDQQAIRTL 607

Query: 61  MEKLVTGYTPSDEIVDWVYLEQEAEAQAL 89
           +    TG+ PSD I D +++ +     A+
Sbjct: 608 LINAPTGFAPSDGICDLLWVRETHRKNAV 636


>VC0260 [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases Vch
           Vibrio cholerae
          Length = 621

 Score = 68.2 bits (165), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 47/70 (67%)

Query: 1   LRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLM 60
           LRPGEKLYEELLIG+N + TSH +IM A EE + W  +E  L+ L++  +  DV  I+ +
Sbjct: 550 LRPGEKLYEELLIGENVEGTSHQKIMTACEEKLSWDAMEDLLTELDVCCHNFDVECIKRI 609

Query: 61  MEKLVTGYTP 70
           +    TGY+P
Sbjct: 610 LLDAPTGYSP 619


>RSp1004 [MG] COG1086 Predicted nucleoside-diphosphate sugar epimerases Rso
           Ralstonia solanacearum
          Length = 665

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/70 (47%), Positives = 43/70 (61%)

Query: 1   LRPGEKLYEELLIGDNPKPTSHSRIMKAHEEFIPWAELEARLSALEMALNVNDVGVIRLM 60
           LRPGEKLYEELLIG +  P++H RIM +HE F+   EL+  L+ L  A    D   IR  
Sbjct: 551 LRPGEKLYEELLIGTDVTPSTHPRIMCSHEHFVLEPELKRLLTGLFAACESGDALRIREQ 610

Query: 61  MEKLVTGYTP 70
           ++ +V  Y P
Sbjct: 611 VQAIVPEYAP 620