BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0242.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphory...    92   2e-19
STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    92   4e-19
SMb21059 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphory...    91   5e-19
YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    88   4e-18
alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...    80   1e-15

>SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Sme Sinorhizobium meliloti
          Length = 255

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 56/89 (62%), Gaps = 1/89 (1%)

Query: 5   GLITEFNEKPQATAGRISGGFFVANQKLFDYLDQDDRLVFEQEPMRKLVADRQLMTYEHD 64
           G +  F EKP    GRI+GGFFV N+ + D +  DD + FE  P+  L  DRQLM + HD
Sbjct: 167 GQVMSFTEKPAGDNGRINGGFFVLNRSVLDRIAGDD-VAFESAPLEGLARDRQLMAFPHD 225

Query: 65  GFWQPMDTHREYQLLNSLYEKGKAPWVRW 93
           GFW+PMDT R+   L  L+++ +APW  W
Sbjct: 226 GFWRPMDTLRDKTQLEELWQQNRAPWKIW 254


>STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Sty Salmonella typhimurium
           LT2
          Length = 257

 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 55/89 (61%), Gaps = 1/89 (1%)

Query: 5   GLITEFNEKPQATAGRISGGFFVANQKLFDYLDQDDRLVFEQEPMRKLVADRQLMTYEHD 64
           G +  F EKP+     I+GGFFV N  + D +D +D   +EQEP+  L    +LM +EH 
Sbjct: 169 GQVRSFQEKPKGDGAMINGGFFVLNPSVIDLID-NDATTWEQEPLMTLAQQGELMAFEHP 227

Query: 65  GFWQPMDTHREYQLLNSLYEKGKAPWVRW 93
           GFWQPMDT R+   L  L+EKGKAPW  W
Sbjct: 228 GFWQPMDTLRDKVYLEGLWEKGKAPWKTW 256


>SMb21059 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Sme Sinorhizobium meliloti
          Length = 174

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%)

Query: 7   ITEFNEKPQATAGRISGGFFVANQKLFDYLDQDDRLVFEQEPMRKLVADRQLMTYEHDGF 66
           + EF EKPQA+ G I+G FFV    + DY+  D+ + FE  PM++L +D QLM Y H+ F
Sbjct: 88  VVEFTEKPQASEGWINGAFFVLEPGVRDYIGGDEDM-FEHAPMQRLASDGQLMAYRHETF 146

Query: 67  WQPMDTHREYQLLNSLYEKGKAPWVRW 93
           WQ MDT RE  +L +L++ G APW  W
Sbjct: 147 WQCMDTLREKHILQTLWDSGNAPWKTW 173


>YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Ype Yersinia pestis
          Length = 261

 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 4   DGLITEFNEKPQATAGRISGGFFVANQKLFDYLDQDDRLVFEQEPMRKLVADRQLMTYEH 63
           D  +  F EKP+     I+GG+FV + K+ D +D  D+  +EQEP+  L A  +LM +EH
Sbjct: 172 DKQVRSFKEKPKGDGALINGGYFVLSPKVIDLID-GDKSTWEQEPLMTLAAQGELMAFEH 230

Query: 64  DGFWQPMDTHREYQLLNSLYEKGKAPWVRW 93
            GFWQPMDT R+   L+ L+E+G+APW  W
Sbjct: 231 AGFWQPMDTLRDKIYLHELWEEGRAPWKVW 260


>alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Nos Nostoc sp. PCC 7120
          Length = 257

 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 1/87 (1%)

Query: 7   ITEFNEKPQATAGRISGGFFVANQKLFDYLDQDDRLVFEQEPMRKLVADRQLMTYEHDGF 66
           IT F EKP+     I+GG+F+   ++ D L  DD  V+E+EP+ KL    +L  ++H+GF
Sbjct: 172 ITSFREKPEGDGAWINGGYFILEPEVID-LIADDATVWEKEPLEKLADMEELSAFKHNGF 230

Query: 67  WQPMDTHREYQLLNSLYEKGKAPWVRW 93
           WQPMDT R+   L  L++  +APW  W
Sbjct: 231 WQPMDTLRDKNYLEELWKNNQAPWKVW 257