BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0241.p         (162 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...   127   8e-30
YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...   127   8e-30
SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphory...   126   2e-29
slr0983 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...   125   3e-29
STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphoryl...   115   3e-26

>alr2825 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Nos Nostoc sp. PCC 7120
          Length = 257

 Score =  127 bits (320), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 84/122 (68%), Gaps = 2/122 (1%)

Query: 6   PKPMIPIGRFPILWHIMKYYASFGHNDFVLCLGYKSHVIKDFFLNYDAHTKDFTIELGKK 65
           PKPM+ IG  PILWHIMK Y+S G NDF++C GYK +VIK++F NY  H  D T ++ + 
Sbjct: 22  PKPMVEIGGKPILWHIMKTYSSHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFDM-RF 80

Query: 66  GSIHFHTDQDESPWRVTLAETGLDAMTGARIKAIQKYIDDDDFMLTYGDGLGDINLDQLV 125
             ++ H+   E PWRVTL  TG + MTG R+K +++++ +D F  TYGDG+ DIN+ +L+
Sbjct: 81  NQMNIHSGYAE-PWRVTLVNTGDNTMTGGRLKRVREHLGNDTFCFTYGDGVCDINITELI 139

Query: 126 SL 127
             
Sbjct: 140 KF 141


>YPO3115 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Ype Yersinia pestis
          Length = 261

 Score =  127 bits (320), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 3/123 (2%)

Query: 6   PKPMIPIGRFPILWHIMKYYASFGHNDFVLCLGYKSHVIKDFFLNYDAHTKDFTIELGKK 65
           PKPM+ IG  PILWHIMK Y+S+G NDFV+C GYK +VIK++F NY  H  D T  + + 
Sbjct: 26  PKPMVEIGGKPILWHIMKLYSSYGINDFVICCGYKGYVIKEYFANYFMHMSDITFCM-RD 84

Query: 66  GSIHFHTDQDESPWRVTLAETGLDAMTGARIKAIQKYIDDDD-FMLTYGDGLGDINLDQL 124
             +  H  + E PW VTL +TG D+MTG R++ ++ Y+ DD+ F  TYGDG+ D+N+ +L
Sbjct: 85  NEMIVHQKRVE-PWNVTLVDTGEDSMTGGRLRRVKDYVKDDEAFCFTYGDGVSDVNIAEL 143

Query: 125 VSL 127
           +  
Sbjct: 144 IEF 146


>SMb21416 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Sme Sinorhizobium meliloti
          Length = 255

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 60/122 (49%), Positives = 83/122 (68%), Gaps = 3/122 (2%)

Query: 6   PKPMIPIGRFPILWHIMKYYASFGHNDFVLCLGYKSHVIKDFFLNYDAHTKDFTIELGKK 65
           PKPMI IG  PILWHIMK Y+ +G +DFV+CLGY+ ++IK++F NY  H+ D T ++   
Sbjct: 22  PKPMIEIGGRPILWHIMKIYSHYGFSDFVICLGYRGYMIKEYFSNYVLHSSDVTFDMA-T 80

Query: 66  GSIHFHTDQDESPWRVTLAETGLDAMTGARIKAIQKYIDDDDFMLTYGDGLGDINLDQLV 125
           G   +HT   E PWRVTL +TG ++MTG R+K +  Y+  D F LTYGDG+ D+++  L 
Sbjct: 81  GETAYHTKSAE-PWRVTLVDTGPESMTGGRLKRVAGYL-GDTFCLTYGDGVADVDVRALT 138

Query: 126 SL 127
             
Sbjct: 139 EF 140


>slr0983 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Syn Synechocystis
          Length = 256

 Score =  125 bits (315), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 87/123 (70%), Gaps = 3/123 (2%)

Query: 6   PKPMIPIGRFPILWHIMKYYASFGHNDFVLCLGYKSHVIKDFFLNYDAHTKDFTIELGKK 65
           PKPMI IG  PILWHI+K Y+++G NDF++C GYK +VIK++F NY  H  D T ++   
Sbjct: 22  PKPMIDIGGRPILWHILKLYSAYGVNDFIICCGYKGYVIKEYFANYFLHMSDVTFDMVSN 81

Query: 66  GSIHFHTDQDESPWRVTLAETGLDAMTGARIKAIQKYIDDDD-FMLTYGDGLGDINLDQL 124
             I  H  + E PW+VTL +TG +++TG R+K I+ +I++D+ F  TYGDGL +IN+ +L
Sbjct: 82  EMI-VHQRKAE-PWKVTLVDTGENSLTGGRLKRIKTFIENDNAFCFTYGDGLANINIQEL 139

Query: 125 VSL 127
           ++ 
Sbjct: 140 IAF 142


>STM2092 [MJ] COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase
           involved in lipopolysaccharide biosynthesis/translation
           initiation factor 2B, gamma/epsilon subunits
           (eIF-2Bgamma/eIF-2Bepsilon) Sty Salmonella typhimurium
           LT2
          Length = 257

 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 3/121 (2%)

Query: 6   PKPMIPIGRFPILWHIMKYYASFGHNDFVLCLGYKSHVIKDFFLNYDAHTKDFTIELGKK 65
           PKPM+ IG  PILWHIMK Y+  G  DF++C GYK +VIK++F NY  H  D T  + + 
Sbjct: 22  PKPMVEIGGKPILWHIMKMYSVHGIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAEN 81

Query: 66  GSIHFHTDQDESPWRVTLAETGLDAMTGARIKAIQKYIDDDD-FMLTYGDGLGDINLDQL 124
             +  H  + E PW VTL +TG  +MTG R+K + +Y+ DD+ F+ TYGDG+ D+++   
Sbjct: 82  -RMEVHHKRVE-PWNVTLVDTGDSSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKAT 139

Query: 125 V 125
           +
Sbjct: 140 I 140