BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0195.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3836 [R] COG2984 ABC-type uncharacterized transport system, pe...    65   4e-11
RSc1740 [R] COG2984 ABC-type uncharacterized transport system, p...    60   1e-09

>PA3836 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Pae Pseudomonas aeruginosa
          Length = 325

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 39/51 (76%)

Query: 1   VVGRILKGDKPGDIPSATSSKLELFVNTAAAQKQGVTLSPELVNSAKTVIK 51
           +V RILKG+KPG+I   TS  L+LFVN  AAQKQGVTLS EL+ SA  VIK
Sbjct: 275 MVVRILKGEKPGEIKPETSDNLQLFVNPGAAQKQGVTLSDELLKSAAEVIK 325


>RSc1740 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Rso Ralstonia solanacearum
          Length = 329

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 36/51 (70%)

Query: 1   VVGRILKGDKPGDIPSATSSKLELFVNTAAAQKQGVTLSPELVNSAKTVIK 51
           VV RILKG+KPG I S  S+ LELFVN  AA KQG TLS +L+  AK  +K
Sbjct: 279 VVARILKGEKPGAIASTGSTDLELFVNPGAAAKQGATLSADLLKDAKETVK 329