BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0194.p         (235 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1740 [R] COG2984 ABC-type uncharacterized transport system, p...   156   5e-38
PA3836 [R] COG2984 ABC-type uncharacterized transport system, pe...   149   7e-36
SMc03830 [R] COG2984 ABC-type uncharacterized transport system, ...   134   2e-31
BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, ...   133   3e-31
AGc4844 [R] COG2984 ABC-type uncharacterized transport system, p...   127   1e-29

>RSc1740 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Rso Ralstonia solanacearum
          Length = 329

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 88/107 (82%)

Query: 33  AEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWEFQSAQANAGTAGQIAKKFV 92
           A K V V S VEHPALDA+RDG K+EL A GF+ GKNLKWE+QSAQ +A TA QIA+KF+
Sbjct: 33  AAKSVEVLSIVEHPALDAIRDGVKEELKAQGFDAGKNLKWEYQSAQGSAATAAQIARKFI 92

Query: 93  GDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWKPS 139
           GD PD IVAI TP+AQ +VAATKT+P+VY+ + DP+AAQLVK W+PS
Sbjct: 93  GDKPDAIVAITTPAAQAVVAATKTVPVVYAGVTDPVAAQLVKSWEPS 139


>PA3836 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Pae Pseudomonas aeruginosa
          Length = 325

 Score =  149 bits (375), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 92/126 (73%), Gaps = 2/126 (1%)

Query: 14  LRAIAGALALSAVCASALAAEKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWE 73
           L A+A  +ALS    +    +K VAVT+ VEHPALDA RDG K+ L  AG+E GKNLKW+
Sbjct: 12  LSALALGMALS--FGANAEEQKSVAVTAIVEHPALDAARDGVKEALQEAGYEDGKNLKWQ 69

Query: 74  FQSAQANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLV 133
           +QSAQ N GTA QIA+KF+GD PDVIV I TPSAQ +VAATK+IPIV+S + DP+ A L 
Sbjct: 70  YQSAQGNTGTAAQIARKFIGDKPDVIVGIATPSAQALVAATKSIPIVFSTVTDPVGAHLT 129

Query: 134 KDWKPS 139
             W+ S
Sbjct: 130 PSWEAS 135


>SMc03830 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Sme Sinorhizobium meliloti
          Length = 317

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 91/120 (75%), Gaps = 3/120 (2%)

Query: 21  LALSAVCASALAA---EKVVAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWEFQSA 77
           +AL+A  A +L A   E  VAVT+ VEHPALDA RDG KD L AAG++ G+NLK+ ++SA
Sbjct: 6   IALAATVALSLPARADEVTVAVTAIVEHPALDAARDGVKDALAAAGYKEGENLKFIYESA 65

Query: 78  QANAGTAGQIAKKFVGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWK 137
           Q N  TA QIA++F G+ P VIV I TPSAQ +V++T+ IP+V++A++DP+ AQLVKD +
Sbjct: 66  QGNPATAAQIARQFAGEAPSVIVPISTPSAQAVVSSTRDIPVVFTAVSDPLGAQLVKDME 125


>BMEI0015 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Bme Brucella melitensis
          Length = 314

 Score =  133 bits (335), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 64/101 (63%), Positives = 81/101 (80%)

Query: 37  VAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWEFQSAQANAGTAGQIAKKFVGDNP 96
           VAVT+ VEHPALDA RDG KD L  AG++ G+NLK+ +QSAQ N  TA QIA++FVG+ P
Sbjct: 22  VAVTAIVEHPALDAARDGVKDALAEAGYKEGENLKFIYQSAQGNPATAAQIARQFVGEGP 81

Query: 97  DVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWK 137
           DVIV I TPSAQ +V+AT  IP+V++A++DP+ AQLVKD K
Sbjct: 82  DVIVPISTPSAQAVVSATLDIPVVFTAVSDPVGAQLVKDLK 122


>AGc4844 [R] COG2984 ABC-type uncharacterized transport system, periplasmic
           component Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 332

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 83/106 (78%), Gaps = 1/106 (0%)

Query: 33  AEKV-VAVTSYVEHPALDAVRDGTKDELVAAGFEPGKNLKWEFQSAQANAGTAGQIAKKF 91
           AE V VAVT+ VEHPALDA RDG K  L  AG++ G+NLK+ ++SAQ N GTA QIA++F
Sbjct: 35  AENVTVAVTAIVEHPALDAARDGVKAALAEAGYKEGENLKFLYESAQGNPGTAAQIARQF 94

Query: 92  VGDNPDVIVAIGTPSAQPMVAATKTIPIVYSAIADPMAAQLVKDWK 137
           VGD P VIV I TPSAQ +VAAT+ IP+V++A++DP+ AQL+K  +
Sbjct: 95  VGDAPAVIVPISTPSAQAVVAATRDIPVVFTAVSDPVGAQLIKSME 140