BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0191.p         (160 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0358 [J] COG0219 Predicted rRNA methylase (SpoU class) Rso Ra...   260   1e-69
NMB0268 [J] COG0219 Predicted rRNA methylase (SpoU class) Nme Ne...   201   8e-52
NMA2218 [J] COG0219 Predicted rRNA methylase (SpoU class) NmA Ne...   198   3e-51
PA5127 [J] COG0219 Predicted rRNA methylase (SpoU class) Pae Pse...   186   2e-47
YPO0071 [J] COG0219 Predicted rRNA methylase (SpoU class) Ype Ye...   184   5e-47

>RSc0358 [J] COG0219 Predicted rRNA methylase (SpoU class) Rso Ralstonia
           solanacearum
          Length = 156

 Score =  260 bits (664), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 125/160 (78%), Positives = 140/160 (87%), Gaps = 4/160 (2%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F+VVLVEPEIPPNTGN+IRLCANTGAQLHL+EPLGFPL+DA+MRRAGLDYHEYA M+VH
Sbjct: 1   MFNVVLVEPEIPPNTGNVIRLCANTGAQLHLIEPLGFPLEDARMRRAGLDYHEYATMRVH 60

Query: 61  QGWDQFLAHRRQDPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120
             WD FL   + DP    ARMFA+TT GSTPFAGLAF+PGD FVFGSETRGL+ ERR  F
Sbjct: 61  ASWDAFLRDAQPDP----ARMFALTTRGSTPFAGLAFQPGDWFVFGSETRGLSEERRAGF 116

Query: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGGS 160
           P SQRIRLPMRP NRS+NLSNTVAVVV+EAWRQNG+ GG+
Sbjct: 117 PPSQRIRLPMRPDNRSLNLSNTVAVVVFEAWRQNGFAGGA 156


>NMB0268 [J] COG0219 Predicted rRNA methylase (SpoU class) Nme Neisseria
           meningitidis MC58
          Length = 154

 Score =  201 bits (510), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 95/159 (59%), Positives = 121/159 (76%), Gaps = 6/159 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F +VL +PEIPPNTGNIIRLCANTGA LHLV+PLGFPLD AKM+RAGLDYHE+A++ VH
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVH 60

Query: 61  QGWDQFLAHRRQDPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120
           + +D  L            R+FA+TT G+      AF+ GD  +FG ETRGL  +  +S 
Sbjct: 61  ENFDDCLKA------LAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSL 114

Query: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P +Q+IRLPM+PG+RS+NLSNTVAV+++EAWRQ+GY GG
Sbjct: 115 PAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGG 153


>NMA2218 [J] COG0219 Predicted rRNA methylase (SpoU class) NmA Neisseria
           meningitidis Z2491
          Length = 154

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/159 (59%), Positives = 121/159 (76%), Gaps = 6/159 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +F +VL +PEIPPNTGNIIRLCANTGA LHLV+PLGFPLD AKM+RAGLDYHE+A++ V+
Sbjct: 1   MFTIVLYQPEIPPNTGNIIRLCANTGADLHLVKPLGFPLDSAKMKRAGLDYHEFASLTVY 60

Query: 61  QGWDQFLAHRRQDPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120
           + +D  L            R+FA+TT G+      AF+ GD  +FG ETRGL  +  +S 
Sbjct: 61  ENFDDCLKA------LAGRRIFALTTKGTARPDETAFQKGDVLLFGPETRGLPADILDSL 114

Query: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P +Q+IRLPM+PG+RS+NLSNTVAV+++EAWRQ+GY GG
Sbjct: 115 PAAQKIRLPMQPGSRSMNLSNTVAVILFEAWRQHGYAGG 153


>PA5127 [J] COG0219 Predicted rRNA methylase (SpoU class) Pae Pseudomonas
           aeruginosa
          Length = 153

 Score =  186 bits (473), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/156 (57%), Positives = 113/156 (72%), Gaps = 6/156 (3%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           +FHV+L +PEIPPNTGNIIRLCAN G  LHL+EPLGF LDD ++RRAGLDYHEYA+++ +
Sbjct: 1   MFHVILFQPEIPPNTGNIIRLCANAGCSLHLIEPLGFELDDKRLRRAGLDYHEYASVRRY 60

Query: 61  QGWDQFLAHRRQDPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120
                 L          + R+FA TT GS  F  +A++ GD F+FG E+RGL  + R + 
Sbjct: 61  PYLQSCLEA------LGQPRLFAFTTKGSRAFHEVAYQRGDAFLFGPESRGLPEDVRNAL 114

Query: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGY 156
           PT +R+RLPMR G RS+NLSNTVAV VYEAWRQ G+
Sbjct: 115 PTDRRLRLPMREGCRSLNLSNTVAVTVYEAWRQLGF 150


>YPO0071 [J] COG0219 Predicted rRNA methylase (SpoU class) Ype Yersinia
           pestis
          Length = 162

 Score =  184 bits (468), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 115/159 (72%), Gaps = 1/159 (0%)

Query: 1   LFHVVLVEPEIPPNTGNIIRLCANTGAQLHLVEPLGFPLDDAKMRRAGLDYHEYANMQVH 60
           + ++VL EPEIPPNTGNIIRLCANTG QLHL++PLGF  DD ++RRAGLDYHE+A+++ H
Sbjct: 1   MLNIVLFEPEIPPNTGNIIRLCANTGCQLHLIKPLGFTWDDKRLRRAGLDYHEFADIKHH 60

Query: 61  QGWDQFLAHRRQDPLFDEARMFAMTTHGSTPFAGLAFRPGDTFVFGSETRGLAPERRESF 120
             +  FL   + D     AR+FA+TT G+   + ++++  D  +FG ETRGL     ++ 
Sbjct: 61  HDYQAFLDSEKLDST-QPARLFALTTKGTPAHSAVSYQANDYLLFGPETRGLPAYILDAL 119

Query: 121 PTSQRIRLPMRPGNRSINLSNTVAVVVYEAWRQNGYEGG 159
           P  Q+IR+PM+  +RS+NLSN V+VVVYEAWRQ GY G 
Sbjct: 120 PAQQKIRIPMQADSRSMNLSNAVSVVVYEAWRQLGYPGA 158