BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0190.p (304 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0359 [R] COG1040 Predicted amidophosphoribosyltransferases Rs... 150 4e-36 PA0489 [R] COG1040 Predicted amidophosphoribosyltransferases Pae... 132 1e-30 XF0063 [R] COG1040 Predicted amidophosphoribosyltransferases Xfa... 112 2e-24 HI0434 [R] COG1040 Predicted amidophosphoribosyltransferases Hin... 106 6e-23 NMA2217 [R] COG1040 Predicted amidophosphoribosyltransferases Nm... 102 1e-21 >RSc0359 [R] COG1040 Predicted amidophosphoribosyltransferases Rso Ralstonia solanacearum Length = 240 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 106/245 (43%), Positives = 135/245 (55%), Gaps = 10/245 (4%) Query: 58 PHWIKRLLARVPPLLPSACALCGAEGREILCAHCHKRFY-TRQHRRCIQCAMPMPVTGKE 116 P + RL A + LLP ACALCGA +++CA C RRC QCA P+ Sbjct: 4 PLLLHRLAAGLRHLLPCACALCGAVQHDLVCAGCMADMSPLLDRRRCRQCARPLDRRHPA 63 Query: 117 VRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPG 176 C ACL P FDAT+V DY P D L LKF L LA LA + DA PG Sbjct: 64 RHCPACLAGAPDFDATVVIADYAWPLDHLVTGLKFRAQLPLAAWLAERLADALL--AAPG 121 Query: 177 SDVALPMPSLLAPVPLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSA 236 + L +P L+ +P RL+ RG+NQA E+A+ L +G+ P L R +++ AQS Sbjct: 122 TLPELLLPVPLS-MP----RLRTRGYNQAWEVARRLGPQLGIAAIPDGLRRLRDSPAQST 176 Query: 237 LPVGARARNVRSAFALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNL 296 L R N++ AF +P + G H+G+VDDVMTTGATL+E+A LKR GA RVTN Sbjct: 177 LDRDERLANLQGAFDVPDPAC--ITGRHIGVVDDVMTTGATLSEIATQLKRAGAARVTNC 234 Query: 297 VFART 301 V RT Sbjct: 235 VALRT 239 >PA0489 [R] COG1040 Predicted amidophosphoribosyltransferases Pae Pseudomonas aeruginosa Length = 241 Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 73 PSACALCGAEGREI---LCAHCHKRF-YTRQHRRCIQCAMPMPVTGKEVRCGACLKDRPA 128 P AC LC A + LC C ++RQ C +CA+P+P+ G+ CG CL+ PA Sbjct: 15 PPACLLCAARSDQPPRPLCRACAADLPWSRQQ--CRRCALPLPLDGQV--CGECLRRPPA 70 Query: 129 FDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPGSDVALPMPSLLA 188 ++ I Y P D L K L LL L+ + R+ G LP P+ L Sbjct: 71 YEQAIAPWRYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEG----LPRPARLL 126 Query: 189 PVPLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSALPVGARARNVRS 248 PVPL R + RGFNQA ++A+ L+ + L P L R +T AQ L R RN+R Sbjct: 127 PVPLAPRRERRRGFNQAQQLAERLAGELDLRCDPHSLRRVLDTPAQQGLDATVRRRNLRH 186 Query: 249 AFALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFART 301 AFAL A VRGLH+ +VDDV+TTGAT ++ +L+R GA RV ART Sbjct: 187 AFAL--APASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLART 237 >XF0063 [R] COG1040 Predicted amidophosphoribosyltransferases Xfa Xylella fastidiosa 9a5c Length = 241 Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 86/245 (35%), Positives = 115/245 (46%), Gaps = 22/245 (8%) Query: 60 WIKRLLARVPPLLPSACALCGAEGRE--ILCAHCHKRFYTRQHRRCIQCAMPM-PVTGKE 116 W RLL LLPS C C G + LCA C + R C++CA P+ + G Sbjct: 15 WCDRLLRW---LLPSYCLACNEPGHQGKTLCATC-QLLLPRMENACLRCAAPLKELEGIH 70 Query: 117 VRCGACLKDRPAFDATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPG 176 CG CL D P + A Y P ++L KF DL LLA + A++ Sbjct: 71 PTCGPCLYDPPPLETAHAAFLYHWPINKLISRFKFHQDLACGHLLADNMAMAAQH----- 125 Query: 177 SDVALPMPSLLAPVPLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSA 236 P P L PV L RL+ RG++QALE+A+ + + LP P L R + T QS Sbjct: 126 ----WPRPQALVPVSLHHGRLRTRGYDQALELARHVGNRLQLPCLPA-LRRVRATLPQSQ 180 Query: 237 LPVGARARNVRSAFALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNL 296 L R N+ +AF +P + HV +VDDVMTTG TL+ A L+ G R+ Sbjct: 181 LNANKRRSNLHNAF-IPIHPLPA----HVALVDDVMTTGTTLHAAARALRHTGVTRIDAW 235 Query: 297 VFART 301 + AR Sbjct: 236 ICARV 240 >HI0434 [R] COG1040 Predicted amidophosphoribosyltransferases Hin Haemophilus influenzae Length = 229 Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 109/218 (50%), Gaps = 16/218 (7%) Query: 87 LCAHCHKRFYTRQHRRCIQCAMPMPVTGKEVRCGACLKDRPAFDATIVATDYFAPSDQLA 146 LC+ C K+ + + C C + + CG CLK P++D ++ Y P L Sbjct: 23 LCSGCQKQIKSFPY--CGHCGSELQYYAQH--CGNCLKQEPSWDKMVIIGHYIEPLSILI 78 Query: 147 LALKFGGDLRLAPLLARLIH----DASRRNPVPGSDVALPMPSLLAPVPLGRTRLQERGF 202 KF + LARL++ DA R + L +P + PVPL R RG+ Sbjct: 79 QRFKFQNQFWIDRTLARLLYLAVRDAKRTHQ-------LKLPEAIIPVPLYHFRQWRRGY 131 Query: 203 NQALEIAKPLSQLMGLPLQPQLLERKKETEAQSALPVGARARNVRSAFALPFATMDQVRG 262 NQA +++ LS+ + +P +++R K T Q L R +N+++AF+L + ++ Sbjct: 132 NQADLLSQQLSRWLDIPNLNNIVKRVKHTYTQRGLSAKDRRQNLKNAFSLA-VSKNEFPY 190 Query: 263 LHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFAR 300 V +VDDV+TTG+TLNE++ +L++ G + AR Sbjct: 191 RRVALVDDVITTGSTLNEISKLLRKLGVEEIQVWGLAR 228 >NMA2217 [R] COG1040 Predicted amidophosphoribosyltransferases NmA Neisseria meningitidis Z2491 Length = 241 Score = 102 bits (254), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 109/231 (47%), Gaps = 17/231 (7%) Query: 76 CALC-GAEG-REILCAHCHKR---FYTRQHRRCIQCAMPMPVTGKEVRCGACLKDRPAFD 130 C LC G+ G + +CA C + T C C M V G V CG C K PAFD Sbjct: 19 CVLCHGSSGVSDGICAGCRDDLAAYRTDAANSCPLCFMH--VQGGAV-CGGCQKKPPAFD 75 Query: 131 ATIVATDYFAPSDQLALALKFGGDLRLAPLLARLIHDASRRNPVPGSDVALPMPSLLAPV 190 + Y P + ALK DL + LA L+ P +A + PV Sbjct: 76 RMWASLHYEPPVSNMIHALKHLADLSMVQPLADLMMQN------PPDRLADECFDFVLPV 129 Query: 191 PLGRTRLQERGFNQALEIAKPLSQLMGLPLQPQLLERKKETEAQSALPVGARARNVRSAF 250 PL R RL +RGFNQ+ I L+Q G + P+ + QS L G R RN+++AF Sbjct: 130 PLSRERLLQRGFNQSESIVGLLAQRYGWQILPRHTVFRHHRPPQSTLKGGERRRNIKNAF 189 Query: 251 ALPFATMDQVRGLHVGIVDDVMTTGATLNEVAIVLKRHGARRVTNLVFART 301 + + ++ ++DDV TTGATL+E+A LK+ GA R+ ART Sbjct: 190 EIRTPIPENC---NILLIDDVFTTGATLDELAKTLKKSGANRICCWTLART 237