BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0188.p         (101 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0361 [S] COG5488 Integral membrane protein Rso Ralstonia sola...    65   3e-11

>RSc0361 [S] COG5488 Integral membrane protein Rso Ralstonia solanacearum
          Length = 171

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/90 (43%), Positives = 52/90 (57%), Gaps = 4/90 (4%)

Query: 1   VGAAMLVYARHATDREVVRLVDEGLVVEVTQGSRSSRSTL--HWQGMRIDYPVGRQALVA 58
           +G A+L YARHA+D E + L D+ LV+E     R  R  L  HW  + +  P+  Q  VA
Sbjct: 75  LGWALLYYARHASDYERIELDDDALVIEQVNACRRVRHVLNPHWVHVEVVEPLQEQ--VA 132

Query: 59  LESRGQRVEVGRFMNEGQRREFARELQREL 88
           L S G+ V+VGRF++   RR  A EL R L
Sbjct: 133 LCSSGRVVQVGRFLDPAGRRRLADELSRCL 162