BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0185.p (218 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0363 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases,... 389 e-108 PA0106 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, ... 317 1e-86 RP405 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, s... 243 3e-64 BMEI1465 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases... 243 3e-64 RC0553 Non COG 242 4e-64 >RSc0363 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Rso Ralstonia solanacearum Length = 534 Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust. Identities = 187/218 (85%), Positives = 202/218 (92%) Query: 1 MPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGL 60 MPVT QLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLF++GFIFVFT+GGFTGL Sbjct: 317 MPVTGQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFALGFIFVFTIGGFTGL 376 Query: 61 ILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWA 120 ILAV PIDIQ+QDTYYVVAHFHYVLVAGSLFALFAG+YYWGPKW+G+MYNE RG+ HFW Sbjct: 377 ILAVAPIDIQLQDTYYVVAHFHYVLVAGSLFALFAGFYYWGPKWSGYMYNETRGQIHFWG 436 Query: 121 SLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPS 180 S+I FN+TFFPMHFLGLAGMPRRYADYP QF DFN IASIGA GFGL QVYF FFVV+PS Sbjct: 437 SMIFFNLTFFPMHFLGLAGMPRRYADYPQQFADFNAIASIGALGFGLMQVYFFFFVVLPS 496 Query: 181 IKGGKQAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 218 +GG++A KPW+GAEGLEWTVPSPAPFHTFEEPP VK Sbjct: 497 YRGGEKAADKPWDGAEGLEWTVPSPAPFHTFEEPPHVK 534 >PA0106 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Pae Pseudomonas aeruginosa Length = 530 Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 149/218 (68%), Positives = 178/218 (81%), Gaps = 1/218 (0%) Query: 1 MPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGL 60 +PVT +LFFMYATMLIAVPTGVK+FNW+ TMW GS+TFETPMLF+V F+ +FT+GGF+GL Sbjct: 314 IPVTGELFFMYATMLIAVPTGVKVFNWVTTMWEGSLTFETPMLFAVAFVILFTIGGFSGL 373 Query: 61 ILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWA 120 +LA+ P D Q DTY+VVAHFHYVLV G++F +FA YYW PKWTG MY+E GK HFW Sbjct: 374 MLAIAPADFQYHDTYFVVAHFHYVLVPGAIFGIFASAYYWLPKWTGHMYDETLGKLHFWM 433 Query: 121 SLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPS 180 S I N+ FFPMHF+GLAGMPRR DY QF DFNM++SIGAF FG +Q+ FL F+VI Sbjct: 434 SFIGMNLAFFPMHFVGLAGMPRRIPDYNLQFADFNMVSSIGAFMFGTTQLLFL-FIVIKC 492 Query: 181 IKGGKQAEAKPWEGAEGLEWTVPSPAPFHTFEEPPVVK 218 I+GGK A AKPW+GAEGLEW++PSPAP+HTF PP VK Sbjct: 493 IRGGKPAPAKPWDGAEGLEWSIPSPAPYHTFSTPPEVK 530 >RP405 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Rpr Rickettsia prowazekii Length = 534 Score = 243 bits (620), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 120/213 (56%), Positives = 153/213 (71%), Gaps = 2/213 (0%) Query: 4 TAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILA 63 A ++F TM+IAVPTG+KIF+WIATMW GS+TF TPMLF++GFI +FT+GG TG+IL+ Sbjct: 319 NALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFAIGFIILFTIGGVTGIILS 378 Query: 64 VTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLI 123 + +D + DTYYVVAHFHY + G+LF FAG+YYW K +G Y E GK HFW + I Sbjct: 379 NSALDRVLHDTYYVVAHFHYTMSLGALFTAFAGFYYWFGKISGKQYPEILGKIHFWITFI 438 Query: 124 TFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPSIKG 183 N+TFFP HFLGLAGMPRR DYP F +NM++SIGA G + ++ F+V ++K Sbjct: 439 GVNLTFFPQHFLGLAGMPRRIPDYPEAFAGWNMVSSIGA-GISIFAAFYFVFIVFYTLKY 497 Query: 184 GKQAEAKPW-EGAEGLEWTVPSPAPFHTFEEPP 215 GK A PW +GA+ LEW + SP PFHTFE PP Sbjct: 498 GKNCTANPWGDGADTLEWKLNSPPPFHTFETPP 530 >BMEI1465 [C] COG0843 Heme/copper-type cytochrome/quinol oxidases, subunit 1 Bme Brucella melitensis Length = 552 Score = 243 bits (619), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 117/219 (53%), Positives = 161/219 (73%), Gaps = 2/219 (0%) Query: 1 MPVTAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGL 60 + + Q +F++ATM+IAVPTG+KIF+WIATMW GS++F PML+++GFIF+FT+GG TG+ Sbjct: 335 LSLDTQRYFVFATMVIAVPTGIKIFSWIATMWGGSISFRAPMLWAIGFIFLFTIGGVTGV 394 Query: 61 ILAVTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWA 120 LA +D + DTYYVVAHFHYVL G++FA+FAG+YYW PK +G+MYNE+ K HFW Sbjct: 395 QLANAGLDRALHDTYYVVAHFHYVLSLGAVFAIFAGWYYWFPKMSGYMYNEFTAKLHFWV 454 Query: 121 SLITFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPS 180 + + N+ FFP HFLGLAGMPRRY DYP + +NMI+S G++ G + + FL + V + Sbjct: 455 TFVGVNLVFFPQHFLGLAGMPRRYIDYPDAYAGWNMISSYGSYISGFAVLIFL-YNVFEA 513 Query: 181 IKGGKQAEAKPW-EGAEGLEWTVPSPAPFHTFEEPPVVK 218 ++A A PW +GA LEW + SP PFH +E+ P +K Sbjct: 514 FAKKREAGANPWGDGATTLEWQLSSPPPFHQWEQLPRIK 552 >RC0553 Non COG Length = 532 Score = 242 bits (618), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 121/216 (56%), Positives = 154/216 (71%), Gaps = 2/216 (0%) Query: 4 TAQLFFMYATMLIAVPTGVKIFNWIATMWRGSMTFETPMLFSVGFIFVFTMGGFTGLILA 63 A ++F TM+IAVPTG+KIF+WIATMW GS+TF TPMLFS+GFI +FT+GG TG+IL+ Sbjct: 317 NALIYFTAGTMIIAVPTGIKIFSWIATMWGGSITFPTPMLFSIGFIILFTIGGVTGIILS 376 Query: 64 VTPIDIQMQDTYYVVAHFHYVLVAGSLFALFAGYYYWGPKWTGFMYNEWRGKFHFWASLI 123 + +D + DTYYVVAHFHY + G+LF FAG+YYW K +G Y + GK HFW + I Sbjct: 377 NSALDRVLHDTYYVVAHFHYTMSLGALFTAFAGFYYWFGKISGKQYPDILGKIHFWITFI 436 Query: 124 TFNITFFPMHFLGLAGMPRRYADYPAQFTDFNMIASIGAFGFGLSQVYFLFFVVIPSIKG 183 N+TFFP HFLGLAGMPRR DYP F +NM++SIGA G + + F+V ++K Sbjct: 437 GVNLTFFPQHFLGLAGMPRRIPDYPEAFAGWNMVSSIGA-GISMFAALYFVFIVFYTLKY 495 Query: 184 GKQAEAKPW-EGAEGLEWTVPSPAPFHTFEEPPVVK 218 GK PW EGA+ LEWT+ SP PFHTFE PP ++ Sbjct: 496 GKDCPNNPWGEGADTLEWTLTSPPPFHTFETPPHIE 531