BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0184.p (190 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralst... 256 2e-68 PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudo... 145 7e-35 BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Bruc... 125 4e-29 AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrob... 117 1e-26 SMc00012 [O] COG3175 Cytochrome oxidase assembly factor Sme Sino... 117 1e-26 >RSc0365 [O] COG3175 Cytochrome oxidase assembly factor Rso Ralstonia solanacearum Length = 202 Score = 256 bits (653), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 117/180 (65%), Positives = 144/180 (80%), Gaps = 2/180 (1%) Query: 6 DPLQDQE--ERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEA 63 DP D ERGLNR ML KL VV V+MFGFGYA++P+Y+KICE+T +N LT +D+ A Sbjct: 9 DPTDDARAAERGLNRAMLGKLAVVVVMMFGFGYAMVPLYKKICELTNINVLTTRDLDGGA 68 Query: 64 PANTQIDKSRTITVEFDGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQAI 123 NTQ+D++RT+TVEFD N+QGP+RFRP SM+VHPGE+ Q+ YEVVN + R+V AQAI Sbjct: 69 LRNTQVDQARTVTVEFDSNSQGPFRFRPVKNSMEVHPGEINQIVYEVVNKEGRSVSAQAI 128 Query: 124 PSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEIN 183 PSYAP+Q+ FFKK+ECFCF QQTL N++++MPVVF IDP LPKDV TITLSYTFFEI Sbjct: 129 PSYAPKQATEFFKKIECFCFKQQTLAGNESREMPVVFVIDPDLPKDVKTITLSYTFFEIG 188 >PA0107 [O] COG3175 Cytochrome oxidase assembly factor Pae Pseudomonas aeruginosa Length = 184 Score = 145 bits (365), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 71/170 (41%), Positives = 100/170 (58%), Gaps = 5/170 (2%) Query: 18 RVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDKSRTITV 77 R ++ +LL+V VLMF FG+AL+P+Y +C G+N K Q+D R + V Sbjct: 9 RRLVGRLLLVTVLMFAFGFALVPLYDVMCRALGIN---GKTAGSAYSGEQQVDVGREVKV 65 Query: 78 EF--DGNAQGPWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQAIPSYAPQQSAAFF 135 +F N W FR + VHPG + Q+ + N + + AQAIPS AP ++AA+F Sbjct: 66 QFMTSNNIDMVWEFRSAGDQLVVHPGAVNQMVFYARNPSDKPMTAQAIPSIAPAEAAAYF 125 Query: 136 KKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPKDVTTITLSYTFFEINGK 185 K ECFCFTQQ L P ++ +MPV F +D LPKDV +TL+YT F+I + Sbjct: 126 HKTECFCFTQQVLQPGESIEMPVRFIVDRDLPKDVRHVTLAYTLFDITAR 175 >BMEI1463 [O] COG3175 Cytochrome oxidase assembly factor Bme Brucella melitensis Length = 237 Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/186 (40%), Positives = 103/186 (55%), Gaps = 12/186 (6%) Query: 5 DDPLQDQEERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAP 64 D ++++R N + L V M G YA +P+YR C+VTG T + VE Sbjct: 39 DQGENEKKQRRSNATIAVACLSFFVCMIGAAYASVPLYRIFCQVTGYGGTTQR---VEQY 95 Query: 65 ANTQIDKSRTITVEFDGN-AQG-PWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQA 122 ++T +DK TI V FD N A G PW F+P + V GE T + YE N +A Sbjct: 96 SDTILDK--TIKVRFDANIANGLPWDFKPMQREVTVRIGETTMIKYEAHNLFGEETYGRA 153 Query: 123 IPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLP-----KDVTTITLSY 177 + AP ++ A+F KVECFCFT TL P + ++PVVF++DP+ KDV TITLSY Sbjct: 154 SFNVAPGRAGAYFNKVECFCFTDNTLKPGEDLELPVVFFVDPEFVNDPDLKDVKTITLSY 213 Query: 178 TFFEIN 183 TFF I+ Sbjct: 214 TFFPID 219 >AGc1406 [O] COG3175 Cytochrome oxidase assembly factor Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 205 Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/176 (38%), Positives = 94/176 (53%), Gaps = 12/176 (6%) Query: 12 EERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAPANTQIDK 71 +R NR +L LV M G YA +P+Y C VTG N T + VE ++ +DK Sbjct: 13 SQRVSNRSILVLCLVFFCAMIGMAYAAVPLYSLFCRVTGYNGTTQR---VEQYSDVILDK 69 Query: 72 SRTITVEFDGNAQGP--WRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQAIPSYAPQ 129 TI V FD N W FRP ++ GE +VT++ N A+ + P Sbjct: 70 --TINVTFDANTSNGLNWDFRPVDKMVKPKIGETIKVTFKATNRSPVATTGTAVFNVTPM 127 Query: 130 QSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLP-----KDVTTITLSYTFF 180 ++ A+F KVECFCFT+ TL P + +MPVVF++DP + K V T+TLSYTF+ Sbjct: 128 EAGAYFNKVECFCFTETTLQPGETLEMPVVFFVDPDIATARETKSVHTLTLSYTFY 183 >SMc00012 [O] COG3175 Cytochrome oxidase assembly factor Sme Sinorhizobium meliloti Length = 198 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 68/183 (37%), Positives = 96/183 (52%), Gaps = 13/183 (7%) Query: 5 DDPLQDQEERGLNRVMLRKLLVVAVLMFGFGYALIPVYRKICEVTGVNFLTPKDVTVEAP 64 D+ D++ER N V++ L M G YA +P+Y C VTG N T + VE Sbjct: 3 DNGQADRKERS-NGVIVGTCLAFVAGMIGMAYAAVPLYDMFCRVTGYNGTTQR---VEQA 58 Query: 65 ANTQIDKSRTITVEFDGNAQG--PWRFRPTVTSMQVHPGEMTQVTYEVVNTQSRNVDAQA 122 ++ +D+ I V FD N PW F P + V GE Q+ Y N S QA Sbjct: 59 SDLILDEK--IKVTFDANVAAGLPWEFVPVQRDIDVRIGETVQIMYRAKNLASTPTTGQA 116 Query: 123 IPSYAPQQSAAFFKKVECFCFTQQTLGPNQAKQMPVVFYIDPKLPK-----DVTTITLSY 177 + P + A+F KV+CFCFT+ TL P + +MPVVF++DP++ K + T+TLSY Sbjct: 117 TFNVTPMAAGAYFNKVQCFCFTETTLEPGEEMEMPVVFFVDPEIVKPVETQGIKTLTLSY 176 Query: 178 TFF 180 TF+ Sbjct: 177 TFY 179