BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0177.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0372 [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 400 e-111 XF1360 [O] COG0109 Polyprenyltransferase (cytochrome oxidase ass... 287 2e-77 PA0113 [O] COG0109 Polyprenyltransferase (cytochrome oxidase ass... 273 3e-73 RP346 [O] COG0109 Polyprenyltransferase (cytochrome oxidase asse... 192 7e-49 mll1047 [O] COG0109 Polyprenyltransferase (cytochrome oxidase as... 188 1e-47 >RSc0372 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Rso Ralstonia solanacearum Length = 310 Score = 400 bits (1029), Expect = e-111, Method: Compositional matrix adjust. Identities = 199/297 (67%), Positives = 237/297 (79%), Gaps = 4/297 (1%) Query: 2 TTLTAQP----NRIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLL 57 T+ + QP + +QY ALTKPRVTQLAVFCAVIGMFL+TP + W +I G +GIWL Sbjct: 7 TSTSTQPSGWRHTASQYAALTKPRVTQLAVFCAVIGMFLATPGMVPWPVLIGGAVGIWLF 66 Query: 58 AGAAFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLT 117 AGAAFAINCLVER+ID+ M RTA RP A GE+ Q L+FS VLGG GMW L+ N LT Sbjct: 67 AGAAFAINCLVERKIDAMMRRTAWRPSASGELGARQILLFSLVLGGAGMWTLHVFANDLT 126 Query: 118 MWLTFATFVGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMII 177 MWLTFATF+GYAIIYT++LKPAT QNIVIGGL+GAMPPALGWAA+AN VP +AW+LV+II Sbjct: 127 MWLTFATFIGYAIIYTLLLKPATPQNIVIGGLSGAMPPALGWAAVANSVPAEAWILVLII 186 Query: 178 FIWTPPHFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMS 237 F WTPPHFWALA+YRR DYAKSGLPMLPITHG T LH+L+YT+ + A ++LPF GMS Sbjct: 187 FTWTPPHFWALALYRRADYAKSGLPMLPITHGEKFTLLHILLYTLIMVAATILPFVHGMS 246 Query: 238 GLIYLGTAVVLGAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDHYFLF 294 G +YL A+VLG F ++W+MYR Y+D +A+K F YSIVYLS+LFA LL+DHYF F Sbjct: 247 GYLYLAVALVLGFGFLVHAWRMYRNYSDALAQKTFRYSIVYLSLLFAALLIDHYFKF 303 >XF1360 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Xfa Xylella fastidiosa 9a5c Length = 303 Score = 287 bits (734), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 156/295 (52%), Positives = 202/295 (68%), Gaps = 7/295 (2%) Query: 10 RIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKV---IFGTLGIWLLAGAAFAINC 66 R+ YW LTKP+V L VF A++GMFL+ P +P ++ G LGIWL A AA AIN Sbjct: 6 RLRDYWDLTKPKVVALIVFTALVGMFLAIPGIPSVVQIQSGALGFLGIWLAAAAAAAINQ 65 Query: 67 LVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFV 126 L++ +ID++MART+ RP+ G++ Q LVF+GVL L M +L VN +T LTF + + Sbjct: 66 LLDAKIDAQMARTSWRPLVVGKVRPVQVLVFAGVLITLSMTILTLGVNLITAVLTFTSLI 125 Query: 127 GYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWV----LVMIIFIWTP 182 GYA+IYT+ LK TSQNIVIGGLAGAMPP LGWAA+ W+ LV IIF+WTP Sbjct: 126 GYAVIYTVYLKRMTSQNIVIGGLAGAMPPMLGWAAVTGLSTAADWINASLLVAIIFVWTP 185 Query: 183 PHFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLIYL 242 PHFWALA++RR DYAK+ +PMLP+THG+ T +L+YT+ L V+LLP A GMSG+ YL Sbjct: 186 PHFWALAIFRRADYAKASIPMLPVTHGVQHTSRQILLYTVILSVVTLLPVATGMSGVFYL 245 Query: 243 GTAVVLGAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDHYFLFRSF 297 G A+VL A+F WY+W++ +L A K F YSIVYL LFA L+ DH+ F Sbjct: 246 GAALVLDAVFLWYAWRLLDPPDELFAMKTFGYSIVYLMALFAFLMFDHWLRLADF 300 >PA0113 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Pae Pseudomonas aeruginosa Length = 304 Score = 273 bits (698), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 152/287 (52%), Positives = 194/287 (67%), Gaps = 4/287 (1%) Query: 13 QYWALTKPRVTQLAVFCAVIGMFLSTPDLPD----WHKVIFGTLGIWLLAGAAFAINCLV 68 + LTKP+V L + ++IGM L+T D W +IFG LGI L AGAA A+N +V Sbjct: 15 DFLELTKPKVVVLMLITSLIGMLLATKAPLDGFVPWQVLIFGNLGIGLCAGAAAAVNHVV 74 Query: 69 EREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLTFATFVGY 128 +R IDS MART +RP+A G ++ L F+ +L GM VL NPLT WLT A+ +GY Sbjct: 75 DRRIDSIMARTHKRPLAEGRVSPSMALGFALLLALAGMAVLLAFTNPLTAWLTLASLLGY 134 Query: 129 AIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWTPPHFWAL 188 A +YT LK AT QNIVIGGLAGA PP LGW A+ + + +LV+IIF WTPPHFWAL Sbjct: 135 AALYTGFLKRATPQNIVIGGLAGAAPPLLGWVAITGHLSAEPLLLVLIIFAWTPPHFWAL 194 Query: 189 AMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLIYLGTAVVL 248 ++R+D+YAK+ +PMLP+THG TKLH+L+YT+ LFAVSL+PF I MSGL+YL A+ L Sbjct: 195 CIHRKDEYAKADIPMLPVTHGERYTKLHILLYTLVLFAVSLMPFVIHMSGLVYLLCALAL 254 Query: 249 GAIFFWYSWQMYRRYTDLIARKAFAYSIVYLSILFAVLLVDHYFLFR 295 GA F ++W +Y A K F YSIVYL +LF LLVDHY + Sbjct: 255 GARFLDWAWALYCDSRPHAAIKTFKYSIVYLFLLFMALLVDHYLPLK 301 >RP346 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Rpr Rickettsia prowazekii Length = 310 Score = 192 bits (488), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 171/288 (59%), Gaps = 6/288 (2%) Query: 2 TTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFG--TLGIWLLAG 59 + + + Y L KPRV L +F +GM+L+ PD H +I G + I L AG Sbjct: 11 NKINNSQSTVKDYILLMKPRVMSLVIFTGFVGMWLA-PD--SIHPLIAGIAVICIALGAG 67 Query: 60 AAFAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMW 119 +A A+N +R+ID M RT RP+ RG I + L F + G ++ + VN L + Sbjct: 68 SAGAMNMWYDRDIDILMKRTQNRPIVRGVIEPDEALSFGLITGFFAVFFMALCVNILASF 127 Query: 120 LTFATFVGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFI 179 L T Y IYTI LK + QNIVIGG++GA+PP +G AA++N + +++ +L +IIFI Sbjct: 128 LLLFTIFYYICIYTIWLKRRSIQNIVIGGVSGALPPVIGHAAVSNTISLESIILFLIIFI 187 Query: 180 WTPPHFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGL 239 WTPPH WA+A++ DDY +PM+P+ G TK +L+Y+I LF VSL+PF IGM+ Sbjct: 188 WTPPHSWAIALFCNDDYKHCKIPMMPVVKGTLYTKKQILIYSIILFIVSLMPFFIGMNND 247 Query: 240 IYLGTAVVLGAIFFWYSWQMYRRYTD-LIARKAFAYSIVYLSILFAVL 286 IYL ++G +F +Y++ ++ D A++ F YSI YL +F +L Sbjct: 248 IYLIIVCIIGLVFLYYAFSLFYDTPDNKQAKRFFTYSIFYLCFIFILL 295 >mll1047 [O] COG0109 Polyprenyltransferase (cytochrome oxidase assembly factor) Mlo Mesorhizobium loti Length = 311 Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/290 (42%), Positives = 173/290 (59%), Gaps = 3/290 (1%) Query: 2 TTLTAQPNRIAQYWALTKPRVTQLAVFCAVIGMFLSTPDLPDWHKVIFGTLGIWLLAGAA 61 T++ A ++AL KPRV LAVF A +G+ ++ P + + I + AGAA Sbjct: 11 TSIRLSEATAADFFALLKPRVMALAVFTAFVGLMVA-PGAVNPVIAVIAIAAIAIGAGAA 69 Query: 62 FAINCLVEREIDSRMARTARRPMARGEITVGQTLVFSGVLGGLGMWVLYNLVNPLTMWLT 121 A+N + +ID+ M+RT++RP+ G +T G+ L F VL L + L LV L L Sbjct: 70 GALNMWYDADIDALMSRTSKRPVPSGRVTPGEALGFGLVLSALSVMTLGVLVGWLAASLL 129 Query: 122 FATFVGYAIIYTIVLKPATSQNIVIGGLAGAMPPALGWAAMANDVPMQAWVLVMIIFIWT 181 T Y +IYT+ LK +T QNIVIGG AGA+PP +GWAA V +++ VL +IIF+WT Sbjct: 130 AFTIFFYIVIYTMWLKRSTPQNIVIGGAAGALPPVIGWAAATGAVGVESLVLFLIIFLWT 189 Query: 182 PPHFWALAMYRRDDYAKSGLPMLPITHGMDVTKLHVLMYTIALFAVSLLPFAIGMSGLIY 241 PPHFWALA+++ DYA +G+PM+P G T+ +L Y + L V +LP+A G + Y Sbjct: 190 PPHFWALALFKVGDYAAAGIPMMPNVAGPASTRRQILAYALLLAPVGVLPWAFGFTSGYY 249 Query: 242 LGTAVVLGAIFFWYSWQMY-RRYTDLIARKA-FAYSIVYLSILFAVLLVD 289 + LG F W+SW++ T+L KA FAYSIVYL +FA LL D Sbjct: 250 GIASAALGVGFIWHSWKVRAASETELKPAKALFAYSIVYLFAVFAALLAD 299