BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0176.p         (195 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo...   231   5e-61
NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo...   137   2e-32
NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo...   136   3e-32
AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invo...   135   6e-32
CC3503 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, invol...   134   2e-31

>RSc0373 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in
           biogenesis of respiratory and photosynthetic systems Rso
           Ralstonia solanacearum
          Length = 200

 Score =  231 bits (590), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 109/162 (67%), Positives = 133/162 (82%), Gaps = 2/162 (1%)

Query: 29  FNNTDVTGL-DYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVM 87
           F N D+TG   +   F+LTDHTGK RTL DF+GKVVVMFFGYT CPDVCPTT+ E+  VM
Sbjct: 31  FQNLDITGAKSFGAGFSLTDHTGKRRTLEDFRGKVVVMFFGYTHCPDVCPTTLAELRGVM 90

Query: 88  KELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLR-GDQQQTEKVAKEFKVFY 146
             LG DAD+VQVLFVTVDP+RDTQ++L++YVPAFD RF+GLR  + Q+ +KVAK+FKVFY
Sbjct: 91  DGLGKDADRVQVLFVTVDPQRDTQDLLAKYVPAFDPRFIGLRPANDQELQKVAKDFKVFY 150

Query: 147 QKVPGKQPGSYTMDHTAGSYVFDPQGRIRLFVKHGQGPDTLI 188
            KVPG  P +YTMDHTAGSY+FDP+G +RLF+KHGQGP  ++
Sbjct: 151 SKVPGSTPDNYTMDHTAGSYMFDPKGNLRLFIKHGQGPAPIV 192


>NMA1767 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in
           biogenesis of respiratory and photosynthetic systems NmA
           Neisseria meningitidis Z2491
          Length = 217

 Score =  137 bits (344), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 4/166 (2%)

Query: 24  KPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEM 83
           KP+ +   TD+   D   DF LTD  GKP  L+D KGKVV++ FG+T CPDVCPT ++  
Sbjct: 46  KPQTR--GTDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTY 103

Query: 84  SNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLRGDQQQTEKVAK-EF 142
           S+ +K+LG  A  V+V+FV++DPERDT E++ +Y   F+  F+GL     Q   V K ++
Sbjct: 104 SDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGDQNLPVIKQQY 163

Query: 143 KVFYQKVPGKQPG-SYTMDHTAGSYVFDPQGRIRLFVKHGQGPDTL 187
           +V   KV  K    +Y +DH++G+Y+ D  G + +F  +G  P+T+
Sbjct: 164 RVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETI 209


>NMB1578 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in
           biogenesis of respiratory and photosynthetic systems Nme
           Neisseria meningitidis MC58
          Length = 217

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 104/166 (62%), Gaps = 4/166 (2%)

Query: 24  KPELKFNNTDVTGLDYAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEM 83
           KP+ +   TD+   D   DF LTD  GKP  L+D KGKVV++ FG+T CPDVCPT ++  
Sbjct: 46  KPQTR--GTDMRKEDIGGDFTLTDGEGKPFNLSDLKGKVVILSFGFTHCPDVCPTELLTY 103

Query: 84  SNVMKELGPDADKVQVLFVTVDPERDTQEVLSQYVPAFDKRFLGLRGDQQQTEKVAK-EF 142
           S+ +K+LG  A  V+V+FV++DPERDT E++ +Y   F+  F+GL     Q   V K ++
Sbjct: 104 SDTLKQLGGQAKDVKVVFVSIDPERDTPEIIGKYAKQFNPDFIGLTATGGQNLPVIKQQY 163

Query: 143 KVFYQKVPGKQPG-SYTMDHTAGSYVFDPQGRIRLFVKHGQGPDTL 187
           +V   KV  K    +Y +DH++G+Y+ D  G + +F  +G  P+T+
Sbjct: 164 RVVSAKVNQKDDSENYLVDHSSGAYLIDKNGEVAIFSPYGSEPETI 209


>AGc3756 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in
           biogenesis of respiratory and photosynthetic systems Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 202

 Score =  135 bits (340), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 3/150 (2%)

Query: 39  YAKDFALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQ 98
           Y   FALT   G+P T   F+GK   +FFG+T CP+VCPTT+ E++  M+++ P  DK+Q
Sbjct: 38  YGVPFALTAQNGQPITEKAFQGKPTALFFGFTHCPEVCPTTLFELNGWMEKVDPAGDKLQ 97

Query: 99  VLFVTVDPERDTQEVLSQYVPAFDKRFLGLRGDQQQTEKVAKEFKVFYQKVP--GKQP-G 155
             FV+VDPERDT E++ QYV    KR  G+ G   +  +  K ++++ +KVP   K P G
Sbjct: 98  AYFVSVDPERDTPEIMQQYVSNVSKRITGITGPADKIAETLKGYRIYAKKVPVDEKDPNG 157

Query: 156 SYTMDHTAGSYVFDPQGRIRLFVKHGQGPD 185
            YTMDHTA   + D  GR    + +G+ PD
Sbjct: 158 DYTMDHTASVILLDANGRFAGTIAYGENPD 187


>CC3503 [R] COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in
           biogenesis of respiratory and photosynthetic systems Ccr
           Caulobacter vibrioides
          Length = 190

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 84/131 (64%), Gaps = 1/131 (0%)

Query: 43  FALTDHTGKPRTLADFKGKVVVMFFGYTQCPDVCPTTMVEMSNVMKELGPDADKVQVLFV 102
           F LTD  GKP T     GK   +FFG+T CP+VCPTT+ EM+  +K LG DADK+ V+ +
Sbjct: 38  FQLTDMNGKPVTEKSLLGKPTAVFFGFTYCPEVCPTTLTEMTAWLKALGKDADKLNVVLI 97

Query: 103 TVDPERDTQEVLSQYVPAFDKRFLGLRGDQQQTEKVAKEFKVFYQKVPGKQPGSYTMDHT 162
           TVDPERDT   L +Y+  FD R  G  G      K A+ ++V+YQKVP    G YT+DH+
Sbjct: 98  TVDPERDTPAQLKEYLSNFDPRIQGFTGTPDAIAKTARAYRVYYQKVP-LDGGGYTIDHS 156

Query: 163 AGSYVFDPQGR 173
           +  Y+FD +GR
Sbjct: 157 SAIYLFDAKGR 167