BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0165.p         (86 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum             129   1e-30
PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa              122   2e-28
NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491       111   4e-25
NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58        110   1e-24
VC0716 [C] COG1145 Ferredoxin Vch Vibrio cholerae                     108   2e-24

>RSc0391 [C] COG1145 Ferredoxin Rso Ralstonia solanacearum
          Length = 82

 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 62/81 (76%), Positives = 69/81 (85%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          MALMITD+CINCDVCEPECPN AI MGP+IY IDP KCTECVGHF+ PQCQQVCPV CIP
Sbjct: 1  MALMITDECINCDVCEPECPNGAISMGPEIYVIDPGKCTECVGHFDAPQCQQVCPVECIP 60

Query: 61 FNPAWRESREQLMEKYERLQA 81
           +PA  E+ EQLM+KY +L A
Sbjct: 61 NDPAHAETPEQLMQKYLKLTA 81


>PA0362 [C] COG1145 Ferredoxin Pae Pseudomonas aeruginosa
          Length = 83

 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 68/83 (81%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITDDCINCDVCEPECPN AI  G +IY IDP+ CTECVGH++EPQCQQVCPV CIP
Sbjct: 1  MSLKITDDCINCDVCEPECPNGAISQGEEIYVIDPNLCTECVGHYDEPQCQQVCPVDCIP 60

Query: 61 FNPAWRESREQLMEKYERLQAEA 83
           + A  ES++QLMEKY ++  +A
Sbjct: 61 LDDANVESKDQLMEKYRKITGKA 83


>NMA0150 [C] COG1145 Ferredoxin NmA Neisseria meningitidis Z2491
          Length = 83

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 66/79 (83%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+P+ CT+CVGH++EPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FNPAWRESREQLMEKYERL 79
           +  + E+ ++LM KYE++
Sbjct: 61 IDEEYPETHDELMAKYEKI 79


>NMB0123 [C] COG1145 Ferredoxin Nme Neisseria meningitidis MC58
          Length = 83

 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 65/79 (82%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVACIP 60
          M+L ITD+CINCDVCEPECPN+AI  G +IYEI+P+ CT+CVGH++EPQCQQVCPV CI 
Sbjct: 1  MSLFITDECINCDVCEPECPNDAISQGEEIYEINPNLCTQCVGHYDEPQCQQVCPVDCIL 60

Query: 61 FNPAWRESREQLMEKYERL 79
           +    E+ ++LM KYE++
Sbjct: 61 IDEEHPETHDELMAKYEKI 79


>VC0716 [C] COG1145 Ferredoxin Vch Vibrio cholerae
          Length = 84

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MALMITDDCINCDVCEPECPNEAIYMGPQIYEIDPDKCTECVGHFEEPQCQQVCPVA-CI 59
          MAL+IT  C NCD+CEPECPN AI MG +IYEI+PD CTEC GH+++P CQ VCP++ CI
Sbjct: 1  MALLITAKCTNCDMCEPECPNSAISMGDKIYEINPDLCTECKGHYDKPTCQSVCPISNCI 60

Query: 60 PFNPAWRESREQLMEKYERLQAEA 83
            +PA RE+ EQL+EK+  +Q  A
Sbjct: 61 ITDPAHRETEEQLLEKFVVIQGLA 84