BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0164.p         (295 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1395 [GER] COG0697 Permeases of the drug/metabolite transport...   132   1e-30

>RSc1395 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 306

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/285 (37%), Positives = 144/285 (50%), Gaps = 27/285 (9%)

Query: 12  LLVNTTIWGLSWTATRALEGMGLHPVWTTAAIFGLCTMLLVALRYRDLPQL---WRHPAL 68
           +LV  ++WG+SW   R L G GL  +  +A      T++      R        W  PAL
Sbjct: 24  ILVGASVWGISWYPYRLLAGWGLGSLLASAMTGAAATIVAAVALRRHFHTFRWSWLIPAL 83

Query: 69  LWVGLATGLTNSTFNVAVAYGDVVRVILLFYLMPVWTVILARLVLHEAITPRSLTRVALG 128
              GL  G+TN+ F  +  +G V+RV+LLFYL P+WT +LARL LHE +  R    + + 
Sbjct: 84  ---GLVAGVTNAGFVWSTVHGTVMRVLLLFYLTPLWTALLARLWLHERLGARGAALLVVA 140

Query: 129 LSGAFIVLYQPRLGLPLPQSLPDWMAVAAGLLFAITNVLLR----RLQGLSDSARAVAML 184
           L GA ++L     G+P P +  +W  V AGL FA  NVL R    RL  +    R V + 
Sbjct: 141 LCGAGLMLGAGNAGMPWPGTAAEWSGVVAGLAFACNNVLARLVGQRLPTMRAELRTVVVF 200

Query: 185 AGSGL--------LAGVLGVMLALAGAIAWPLHVPATAWPLVGVWALLFLVSNLCLQYGV 236
           AGS L        L GV  V  ALA          A  W LVG  A + +  N  +Q G+
Sbjct: 201 AGSALVGLPAAIWLDGVQAVPDALA---------TADVWLLVGGMAAVLVAGNTLVQRGL 251

Query: 237 ARLPATITSVIMLAEILVASLSAWWFGAAELRPQDLIGGLLIIAA 281
            RLPA   +++ML EI+VA+ S+ W  A  L  Q++ GG  II A
Sbjct: 252 QRLPANRAALLMLFEIVVAAASSAWLTAERLSAQEMAGGACIILA 296