BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0146.p         (215 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia sola...   126   4e-29

>RSp0613 [K] COG1309 Transcriptional regulator Rso Ralstonia solanacearum
          Length = 215

 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/200 (35%), Positives = 113/200 (56%), Gaps = 15/200 (7%)

Query: 9   YDNQRETIVEQAAXGGIRQPARDHRARNGFVGTSMNEVALACGLSKASLYHYFADKHQLL 68
           ++ +RE++++ AA         +  A + +   SMN++A ACG SK+ LYHY+  K  +L
Sbjct: 20  FELRRESVLDTAA---------EAFAADSYASVSMNQIAAACGGSKSRLYHYYEGKEAIL 70

Query: 69  MHICEDHIDRLCALVDEVAQQD-----LAPEPRLRLLVQRFVEEYRDAQNEHRVLTEDVR 123
             + + +  RL  LV E A++D     L+    L LL++ F+ EY  ++  H  L  DV+
Sbjct: 71  FDLLDRYTRRLADLV-ERAERDALHARLSARATLHLLIRTFLAEYATSRTRHVALLNDVK 129

Query: 124 FLEPGDQKRILNGERKVVKAVADAMSAVRPELDRSRMAKPLAMLLFGMINWMFMWLKPDG 183
           +L P  +  IL  ER+VV AV   ++A  P         P+ M++FGM+NW F WLKPDG
Sbjct: 130 YLSPEQRDIILAREREVVAAVGRQLAAAYPGKVDDANRTPVTMMVFGMMNWTFTWLKPDG 189

Query: 184 ELTHERMAVVVSDLLFGGIG 203
            L++E  A +V ++L  G+G
Sbjct: 190 PLSYEGYAEMVIEMLENGLG 209