BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0133.p (299 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0495 [E] COG2049 Allophanate hydrolase subunit 1 Pae Pseudomon... 478 e-135 FN0437 [E] COG2049 Allophanate hydrolase subunit 1 Fnu Fusobacte... 89 9e-18 Cgl0976 [E] COG2049 Allophanate hydrolase subunit 1 Cgl Coryneba... 86 1e-16 STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonel... 75 2e-13 DRA0285 [E] COG2049 Allophanate hydrolase subunit 1 Dra Deinococ... 75 2e-13 >PA0495 [E] COG2049 Allophanate hydrolase subunit 1 Pae Pseudomonas aeruginosa Length = 292 Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust. Identities = 225/288 (78%), Positives = 250/288 (86%) Query: 12 IRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEKLALPGVLDVCLANASFQIRFNPDL 71 IRYS GDEHLFAEV+E+MSLEAFFR MAITRA+E L LPGVLDVCLANASFQ+RF+PD Sbjct: 5 IRYSFGGDEHLFAEVAEAMSLEAFFRGMAITRAIEALQLPGVLDVCLANASFQVRFDPDR 64 Query: 72 IHPLALLEQLKALESSTTAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQY 131 + P ALLE ++ LE+ A R I+TRI+EVPVLY+DPWT+ET RFRDRHQDP STDL+Y Sbjct: 65 LAPQALLETVRGLEAEAVAARSIETRIVEVPVLYNDPWTHETLMRFRDRHQDPDSTDLEY 124 Query: 132 AARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPK 191 AARINGY + QAFI AHSGTPWFVSMVGFVAGLPFMYQMVE++RQLQVPKYLRPR DTPK Sbjct: 125 AARINGYADVQAFIQAHSGTPWFVSMVGFVAGLPFMYQMVERERQLQVPKYLRPRIDTPK 184 Query: 192 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPID 251 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPI+DP+QGLPYL ESMVFFRAGDIVQF+PI+ Sbjct: 185 LTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIFDPRQGLPYLEESMVFFRAGDIVQFRPIE 244 Query: 252 RTAYDAAIVEVEAGRFDLRIRAVRFDLDAFQADPQACIHALKEALHDD 299 RT Y+ EVE+G FDLRIR V FDLDAF ADP+ C L+E LH D Sbjct: 245 RTEYEHMAAEVESGTFDLRIRPVSFDLDAFLADPRGCTQHLQEVLHVD 292 >FN0437 [E] COG2049 Allophanate hydrolase subunit 1 Fnu Fusobacterium nucleatum Length = 262 Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 40/277 (14%) Query: 12 IRYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEKLALPGVLDVCLANASFQIRFNPDL 71 +++ +GD L E +S++ + + ++K + G++++ S + ++ Sbjct: 18 VKFLFSGDSALVIEFGNEISVDINKKIRKMMDNIKKENIDGIIELVPTYCSLLVNYDVLK 77 Query: 72 IHPLALLEQLKAL--ESSTTAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDL 129 + +L+E+LK L + + T E + +IE+P LY+D DL Sbjct: 78 VDYQSLVEKLKTLLNDDNETVEDE-EVTLIEIPTLYNDE----------------CGPDL 120 Query: 130 QYAARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDT 189 Y A N + + + H+GT + V M+GF+ G ++ M E K PR ++ Sbjct: 121 SYVAEYNKLSKEEV-VKIHTGTDYLVYMLGFMPGFTYLGGMSE--------KIATPRLES 171 Query: 190 PKL-----TLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDI 244 P+L ++G G +Y GG+++ G TP +Y+P P V+ +GD Sbjct: 172 PRLQIYPGSVGIAGKQTGMYPSMSPGGWRIIGRTPLKLYNPDSETP------VYISSGDY 225 Query: 245 VQFKPIDRTAYDAAIVEVEAGRFDLRIRAV-RFDLDA 280 +++ I Y+ + +VE + L IR V R +L+A Sbjct: 226 IRYVSISEEEYNNILKKVENNEYKLNIRKVKRGELNA 262 >Cgl0976 [E] COG2049 Allophanate hydrolase subunit 1 Cgl Corynebacterium glutamicum Length = 217 Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 60/232 (25%), Positives = 103/232 (44%), Gaps = 30/232 (12%) Query: 22 LFAEVSESMSLEAFFRAMAITRAVEKLALPGVLDVCLANASFQIRFNPDLIHPLALLEQL 81 L AE +E++ +A+ R++ + +PG++D A + + F+ I P E + Sbjct: 15 LLAEDAEAVQGSILDAVLALNRSLVGMQVPGIIDTIPAAQTLLVTFDTKQITPNRFAEIV 74 Query: 82 KALESSTTAERRID-TRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQYAARINGYDE 140 ++ + A+ + T IE+PV+YD P DL+ A+ G Sbjct: 75 DSIALTPAAKGAAELTDTIEIPVVYDGP-------------------DLETVAQHTGL-S 114 Query: 141 TQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTPKLTLGHGGCF 200 + IA HSGT W + GF G Y ++ Q +P+ PRT P ++ G F Sbjct: 115 VEEVIATHSGTVWTAAFGGFAPGF---YYLIPQTPLWDIPRLESPRTKIPAGSVAVAGEF 171 Query: 201 GCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKPIDR 252 +Y + GG+Q+ G T P++D + P L + GD V+F + + Sbjct: 172 SAVYPQQSPGGWQLLGTTEIPMWDVDRWQPSL------LKPGDSVRFVQVKK 217 >STM0712 [E] COG2049 Allophanate hydrolase subunit 1 Sty Salmonella typhimurium LT2 Length = 218 Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 105/239 (43%), Gaps = 33/239 (13%) Query: 13 RYSIAGDEHLFAEVSESMSLEAFFRAMAITRAVEKLA-LPGVLDVCLANASFQIRFNPDL 71 R + G+ + E+ ++L + R I R ++L +P V++ + + Sbjct: 5 RCYLLGETAVVLELEPPITLASQKR---IWRLTQRLVDMPNVVEAIPGMNNITVILREPQ 61 Query: 72 IHPLALLEQL-KALESSTTAERRIDTRIIEVPVLYDDPWTNETQSRFRDRHQDPSSTDLQ 130 L +E+L + E S E D+R +E+PV+Y DL Sbjct: 62 TLALDAIERLQRWWEESEALEP--DSRSVEIPVIYGGA----------------GGPDLA 103 Query: 131 YAARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQMVEQDRQLQVPKYLRPRTDTP 190 AR +G E Q + H+ + V +GF G P++ + E L +P+ PR P Sbjct: 104 AVARHSGLSEKQV-VELHASVEYVVWFLGFQPGFPYLGNLPEP---LHMPRRAEPRLQVP 159 Query: 191 KLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLPYLRESMVFFRAGDIVQFKP 249 ++G GG IY + GG+Q+ G+TP ++DP +RE+ V R GD V+F P Sbjct: 160 AGSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDP------MRETPVLLRPGDSVRFVP 212 >DRA0285 [E] COG2049 Allophanate hydrolase subunit 1 Dra Deinococcus radiodurans Length = 227 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 83/199 (41%), Gaps = 32/199 (16%) Query: 51 PGVLDVCLANASFQIRFNPDLIHPLALLEQLKALESSTTAERRIDTRIIEVPVLYDDPWT 110 PGV+D A S + ++P+ L L + TA+ + R I++PV+YD Sbjct: 34 PGVVDAVPAYRSLYVEYDPEGTSADELRAWLAQVSVEGTAQAQ---REIKLPVVYD---- 86 Query: 111 NETQSRFRDRHQDPSSTDLQYAARINGYDETQAFIAAHSGTPWFVSMVGFVAGLPFMYQM 170 DL A G + I HS + V +GFVAG PFM Sbjct: 87 ---------------GADLPEVAAHAGLSVAE-VIELHSEPTYRVRALGFVAGFPFMETT 130 Query: 171 VEQDRQLQVPKYLRPRTDTPKLTLGHGGCFGCIYSVRGAGGYQMFGVTPAPIYDPQQGLP 230 E LQVP+ PR P +L IY V GG+ + G T P+YDP + P Sbjct: 131 PEL---LQVPRRATPRAAVPPHSLAVANAQTGIYPVTAPGGWNLLGRTLVPVYDPHRAEP 187 Query: 231 YLRESMVFFRAGDIVQFKP 249 +L R GD V+F P Sbjct: 188 FL------LRPGDTVRFVP 200