BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0129.p (305 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0491 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 444 e-124 mlr5377 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 234 1e-61 SMc01651 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 234 2e-61 PA0218 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 144 4e-34 CAC3361 [K] COG0583 Transcriptional regulator Cac Clostridium ac... 114 2e-25 >PA0491 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 308 Score = 444 bits (1143), Expect = e-124, Method: Compositional matrix adjust. Identities = 214/305 (70%), Positives = 253/305 (82%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA+TLRQ+RYF+ATAE GQISQAAIHL+ISQS+VTSAIQELE +LG LF R+ QGM LT Sbjct: 4 MALTLRQVRYFIATAEFGQISQAAIHLNISQSAVTSAIQELEGMLGVALFTRTAQGMNLT 63 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTASGSLRVAASYTVLGYFLPHHLQRLSQSYPG 120 DSGRHFLNHAYSI RSVDDA+ SP PD G+L+VAASYTV+GYFLPHHLQRL+Q YP Sbjct: 64 DSGRHFLNHAYSIQRSVDDALNSPQPDTRVEGTLKVAASYTVMGYFLPHHLQRLAQWYPE 123 Query: 121 IKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHPLGER 180 +++ + E ERA IE+ L++G D+AV+LT NL IA ETLF S RRLWLP+RHPLGE+ Sbjct: 124 LELQLFEDERASIERGLLDGRYDIAVLLTGNLTEPGIAAETLFNSERRLWLPSRHPLGEK 183 Query: 181 TAVNLAEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 + LA+VA EP+I+LTVDEA ++ALRYW QSG +P +I+ TSS+EAVRSMVANGSGVAI Sbjct: 184 ADLGLADVAGEPYIMLTVDEAGQSALRYWQQSGHRPQVILHTSSVEAVRSMVANGSGVAI 243 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVEFTPAMEAVREYFRQSFLAPQL 300 LSDLVYRPWSLEG RIET+ L+D VP+M+VGLAWR+ E + M A REYFRQSFLAPQ Sbjct: 244 LSDLVYRPWSLEGKRIETLSLVDPVPSMSVGLAWRRDTEASAGMRAFREYFRQSFLAPQQ 303 Query: 301 SSGRR 305 SS RR Sbjct: 304 SSSRR 308 >mlr5377 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 301 Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 127/279 (45%), Positives = 178/279 (63%), Gaps = 2/279 (0%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA T+RQ+++F+A AE G +S AA +L ISQSSVT AI+ELE+ LG LF R P+G+ +T Sbjct: 1 MAFTIRQLQFFIAVAEQGTVSGAAQNLSISQSSVTEAIKELESDLGVELFERHPRGLNIT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDN-TASGSLRVAASYTVLGYFLPHHLQRLSQSYP 119 G FL HA IL V DA +S + A G L++ + V GY L L R ++YP Sbjct: 61 HKGHQFLRHATKILADVSDARRSFSGEQAVAGGRLQLGVTSLVAGYVLSDLLARYRRAYP 120 Query: 120 GIKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHRE-IAYETLFGSVRRLWLPARHPLG 178 G+++ E +E L+ G++D+AV++TSNLR R + E L S RLWLP H L Sbjct: 121 GVEVSAIEDNGDYLEHLLIGGKLDIAVMVTSNLRDRTALQSEILEVSAYRLWLPLGHSLV 180 Query: 179 ERTAVNLAEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGV 238 +++ ++A EP I+LTVDE ++ + G KP++ RT S+EAVRS+VA G+GV Sbjct: 181 GADIISIGDIAGEPLIMLTVDEIEENTGKLLAAIGAKPHVAFRTRSVEAVRSLVATGAGV 240 Query: 239 AILSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKG 277 A+L DLVYRPWSLEG RIE+ + +P + VG+ WR+G Sbjct: 241 ALLPDLVYRPWSLEGDRIESRDISGSLPVVQVGMVWRRG 279 >SMc01651 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 302 Score = 234 bits (596), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 131/298 (43%), Positives = 184/298 (61%), Gaps = 11/298 (3%) Query: 1 MAITLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILT 60 MA TLRQ++YFVA AE G +++AA +L ISQSS+T AI+ELE LG LF R P+G+ +T Sbjct: 1 MAFTLRQLQYFVAVAEQGSVTRAAQNLSISQSSITEAIKELETDLGVELFDRHPRGLAIT 60 Query: 61 DSGRHFLNHAYSILRSVDDAMKSPLPDNTA--SGSLRVAASYTVLGYFLPHHLQRLSQSY 118 +G FL HA IL V DA +S D+ G L + + V GY L L R ++ Sbjct: 61 HNGHQFLRHATKILADVSDARRS-FSDSREERGGKLNLGVTSLVAGYVLSDLLARYRRAC 119 Query: 119 PGIKIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHR-EIAYETLFGSVRRLWLPARHPL 177 PG+++ E + +E L+ GE+D+AV++ SNLR R + E L S RLWLP HPL Sbjct: 120 PGVEVSAIEDNGSYLEHLLIGGELDVAVMVISNLRDRMALQAEILETSPYRLWLPIGHPL 179 Query: 178 GERTAVNLAEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSG 237 +++ ++A EP I+LTVDE ++ + G +P++ RT S+EAVRS+VA G+G Sbjct: 180 VSADIISVEDIAREPLIMLTVDEIEENTGKLLTALGARPHVAFRTRSVEAVRSLVATGAG 239 Query: 238 VAILSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGV-------EFTPAMEAVR 288 +A+L DLVYRPWSLEG RIE+ + +P + VG+ WRKG +F EA+R Sbjct: 240 IALLPDLVYRPWSLEGDRIESRDVSGALPVVQVGMVWRKGSSLPQSARDFVGVAEALR 297 >PA0218 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 306 Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/293 (31%), Positives = 147/293 (50%), Gaps = 4/293 (1%) Query: 4 TLRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRS-PQGMILTDS 62 TLRQ++YFV T E G +++A+ L+I+Q S+++A++ LE G LFIR QG+ LT + Sbjct: 5 TLRQLKYFVTTVECGSVAEASRKLYIAQPSISTAVKGLEESFGVQLFIRHHAQGVSLTPA 64 Query: 63 GRHFLNHAYSILRSVDDAMKSPLPDNTA-SGSLRVAASYTVLGYFLPHHLQRLSQSYPGI 121 G F A +LR + ++ L DN +G + + TV +LP + Q+YPG+ Sbjct: 65 GARFYRKAQELLRMAHEFEQNALADNDVIAGQIDIGCFETVAPLYLPGLIAGFRQAYPGV 124 Query: 122 KIHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVR-RLWLPARHPLGER 180 +I + + E+ E+ Q L G D+A + +L I E L R LP H + Sbjct: 125 EIRIRDGEQQELVQGLTSGRFDLAFLYEHDL-DSTIETEPLMPPQRPHALLPEGHRFAGQ 183 Query: 181 TAVNLAEVANEPFILLTVDEADKTALRYWNQSGRKPNIIMRTSSIEAVRSMVANGSGVAI 240 V+L ++ EP ILL V + + + + G PNI + SIE VR MV G G ++ Sbjct: 184 AQVSLRDLCLEPMILLDVQPSRTYFVSLFEELGLTPNIAFSSPSIEMVRGMVGQGFGFSL 243 Query: 241 LSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVEFTPAMEAVREYFRQ 293 L + + +G ++ V L + V + AW K + T +Y R+ Sbjct: 244 LVTRPHSECTYDGKKVVMVDLAEPVSTSGLAAAWLKRAQLTKPARLFVDYCRE 296 >CAC3361 [K] COG0583 Transcriptional regulator Cac Clostridium acetobutylicum Length = 312 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/285 (30%), Positives = 148/285 (51%), Gaps = 13/285 (4%) Query: 5 LRQIRYFVATAEVGQISQAAIHLHISQSSVTSAIQELEALLGAPLFIRSPQGMILTDSGR 64 RQ Y AE IS+AA L+ISQ S++ I LE LG LF R+ + LT +G Sbjct: 3 FRQFEYVKTIAEEKSISRAAERLYISQPSLSQYIIRLENSLGVKLFDRTSATITLTFAGE 62 Query: 65 HFLNHAYSILRSVDDAMKSPLPD--NTASGSLRVAASYTVLGYFLPHHLQRLSQSYPGIK 122 ++ A +I+ ++++ + L D N + G + + Y LP + + + YP I+ Sbjct: 63 KYIETARNII-NLNNQLTKELNDIANLSKGRVIIGVPSQAGRYILPLVIPKFYKEYPNIE 121 Query: 123 IHVHEKERAEIEQSLVEGEIDMAVVLTSNLRHREIAYETLFGSVRRLWLPARHPLGE--- 179 I V E +E+E+ L+EG+ID+A +LT ++H +I YE++ L P +HP+ Sbjct: 122 IIVEENIVSELEKMLLEGKIDIA-ILTLPVQHEKITYESIMNERIFLIAPKKHPICSVDG 180 Query: 180 RTAVNLAEVANEPFILLTVDEADKTAL-RYWNQSGRKPNIIMRTSSIEAVRSMVANGSGV 238 R + N + NE FILL + + + +++ G KPNII+ ++++A M ++G G Sbjct: 181 RISFNF--IRNEKFILLKKGQRIRLIVDDIFSRIGAKPNIILEITNLDAAYRMASSGMGF 238 Query: 239 AILSDLVYRPWSLEGLRIETVLLMDHVPAMNVGLAWRKGVEFTPA 283 I+ + V + G E ++D + V +A+RKG T A Sbjct: 239 TIVPENVLYLLNTNGK--ENDFIIDSLEHTLV-VAYRKGEYLTRA 280