BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0121.p         (93 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA2122 [V] COG4096 Type I site-specific restriction-modification...   100   1e-21
MA2678 Non COG                                                         64   6e-11

>MA2122 [V] COG4096 Type I site-specific restriction-modification system,
          R (restriction) subunit and related helicases Mac
          Methanosarcina acetivorans str.C2A
          Length = 917

 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/79 (55%), Positives = 57/79 (72%)

Query: 2  TPEIKARQHIDQKLEQAGWVIQDMRQLNLGAAAGVVVREYPTDTGPADYVLFVNRSPVGV 61
          TPE KAR  ID+KL  AGW++Q   ++   A+ G+ V+EY TD GPADYVLFV++ PVG+
Sbjct: 6  TPEQKARNEIDKKLNNAGWIVQKKSKIEWSASRGIAVKEYLTDVGPADYVLFVDKKPVGI 65

Query: 62 IEAKKDTAGENLTATESQT 80
          IEAK+D  G  LTA E Q+
Sbjct: 66 IEAKRDEEGHRLTAVEEQS 84


>MA2678 Non COG
          Length = 98

 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 40/63 (63%)

Query: 3  PEIKARQHIDQKLEQAGWVIQDMRQLNLGAAAGVVVREYPTDTGPADYVLFVNRSPVGVI 62
          PE  AR+ ID+ L+ +GW +QD  ++N G   GV VRE    +G +D  LFV R  VGVI
Sbjct: 9  PEEIAREDIDRMLDLSGWEVQDFNEMNFGTRQGVAVREVHMKSGFSDPTLFVERRAVGVI 68

Query: 63 EAK 65
          EAK
Sbjct: 69 EAK 71