BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0120.p (363 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2898 [J] COG0012 Predicted GTPase, probable translation facto... 583 e-166 NMB1838 [J] COG0012 Predicted GTPase, probable translation facto... 561 e-160 NMA0618 [J] COG0012 Predicted GTPase, probable translation facto... 561 e-160 ychF [J] COG0012 Predicted GTPase, probable translation factor E... 532 e-151 ECs1708 [J] COG0012 Predicted GTPase, probable translation facto... 532 e-151 >RSc2898 [J] COG0012 Predicted GTPase, probable translation factor Rso Ralstonia solanacearum Length = 364 Score = 583 bits (1503), Expect = e-166, Method: Compositional matrix adjust. Identities = 283/364 (77%), Positives = 320/364 (87%), Gaps = 1/364 (0%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60 MSL+CGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVG+VEVPD RL ALA+IVKP Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGVVEVPDQRLSALADIVKP 60 Query: 61 ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120 ER+LPA VEFVDIAGLVAGASKGEGLGNQFL++IRETDAI +VVRCFED NV+HVAG+V Sbjct: 61 ERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVVHVAGKVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSG-DKDAAKLVALLERIMPALDEAKPVR 179 P+ DI VI TELALAD+ TVEKA+ R K A+SG DK+AAKLVA+LE+ LDEAK VR Sbjct: 121 PIADIEVINTELALADLATVEKALARYSKAAKSGNDKEAAKLVAVLEKARSVLDEAKAVR 180 Query: 180 ALGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAA 239 L L EE L+KPLCLITAKP MYVANV D GF +NP LD + AYA + +P+VA+CAA Sbjct: 181 TLSLSDEEWALLKPLCLITAKPTMYVANVKDDGFENNPHLDAVRAYAAQTGSPVVAVCAA 240 Query: 240 IEAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGA 299 IEAEIADLDDADK +FLADMGM+EPGL+R+IRAAF+LLGLQTYFTAGVKEVRAWT+ +G Sbjct: 241 IEAEIADLDDADKTEFLADMGMDEPGLNRVIRAAFKLLGLQTYFTAGVKEVRAWTIHIGD 300 Query: 300 TGPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNF 359 T P+AA IHTDFERGFIRAQTIA++DFI +KGE GAKEAGKMRAEGKEY+VKDGDV++F Sbjct: 301 TAPRAAAAIHTDFERGFIRAQTIAYDDFIQYKGEQGAKEAGKMRAEGKEYIVKDGDVLHF 360 Query: 360 LFNV 363 LFNV Sbjct: 361 LFNV 364 >NMB1838 [J] COG0012 Predicted GTPase, probable translation factor Nme Neisseria meningitidis MC58 Length = 363 Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/363 (73%), Positives = 319/363 (87%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60 MSLKCGIVGLPNVGKSTLFNALT++GI A NYPFCTIEPNVGIVEVPDPR+ LA+IV P Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNP 60 Query: 61 ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120 +++ PA VEFVDIAGLVAGASKGEGLGNQFL++IRETDAIVNVVRCF+D N++HVAGRV Sbjct: 61 QKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180 P+ DI I TELALAD+ +VEKAI RE+K+ARSGDKDA KLV L ++++P LDE KPVR+ Sbjct: 121 PIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRS 180 Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240 GLDAEE ++KPL L+TAKPAMYV NV++ GF +NP LD+L A ++NAP+VA+CAA+ Sbjct: 181 FGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAM 240 Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGAT 300 E+EIA+L+D +KA+FLA+MG+EEPGL+RLIRA + LLGLQTYFTAGVKEVRAWT+ G T Sbjct: 241 ESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360 PQAAGVIHTDFERGFIRAQ I+++DF++ GEA AKEAGKMR EGKEYVV+DGDVM+FL Sbjct: 301 APQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQDGDVMHFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >NMA0618 [J] COG0012 Predicted GTPase, probable translation factor NmA Neisseria meningitidis Z2491 Length = 363 Score = 561 bits (1447), Expect = e-160, Method: Compositional matrix adjust. Identities = 268/363 (73%), Positives = 319/363 (87%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60 MSLKCGIVGLPNVGKSTLFNALT++GI A NYPFCTIEPNVGIVEVPDPR+ LA+IV P Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSGIEAANYPFCTIEPNVGIVEVPDPRMAELAKIVNP 60 Query: 61 ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120 +++ PA VEFVDIAGLVAGASKGEGLGNQFL++IRETDAIVNVVRCF+D N++HVAGRV Sbjct: 61 QKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRVD 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180 P+ DI I TELALAD+ +VEKAI RE+K+ARSGDKDA KLV L ++++P LDE KPVR+ Sbjct: 121 PIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVDLCKKLLPHLDEGKPVRS 180 Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240 GLDAEE ++KPL L+TAKPAMYV NV++ GF +NP LD+L A ++NAP+VA+CAA+ Sbjct: 181 FGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFENNPHLDRLKELAAKENAPVVAVCAAM 240 Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGAT 300 E+EIA+L+D +KA+FLA+MG+EEPGL+RLIRA + LLGLQTYFTAGVKEVRAWT+ G T Sbjct: 241 ESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRAWTIHKGDT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360 PQAAGVIHTDFERGFIRAQ I+++DF++ GEA AKEAGKMR EGKEYVV+DGDVM+FL Sbjct: 301 APQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQDGDVMHFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >ychF [J] COG0012 Predicted GTPase, probable translation factor Eco Escherichia coli K12 Length = 363 Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust. Identities = 251/363 (69%), Positives = 306/363 (84%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60 M KCGIVGLPNVGKSTLFNALTKAGI A N+PFCTIEPN G+V +PDPRL LAEIVKP Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP 60 Query: 61 ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120 +R LP T+EFVDIAGLV GASKGEGLGNQFL++IRET+AI +VVRCFE+ N+IHV+G+V+ Sbjct: 61 QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180 P DDI VI TELALAD+ T E+AIHR QKKA+ GDKDA +A+LE+ +P L+ A +RA Sbjct: 121 PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA 180 Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240 L L AEE I+ L +T KP MY+ANV++ GF +NP LDQ+ A ++ + +V +CAA+ Sbjct: 181 LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV 240 Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGAT 300 EA+IA+LDD ++ +F+ ++G+EEPGL+R+IRA ++LL LQTYFTAGVKEVRAWT+PVGAT Sbjct: 241 EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360 PQAAG IHTDFE+GFIRAQTI+FEDFI +KGE GAKEAGKMRAEGK+Y+VKDGDVMNFL Sbjct: 301 APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363 >ECs1708 [J] COG0012 Predicted GTPase, probable translation factor Ecs Escherichia coli O157:H7 Length = 363 Score = 532 bits (1370), Expect = e-151, Method: Compositional matrix adjust. Identities = 251/363 (69%), Positives = 306/363 (84%) Query: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNVGIVEVPDPRLKALAEIVKP 60 M KCGIVGLPNVGKSTLFNALTKAGI A N+PFCTIEPN G+V +PDPRL LAEIVKP Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPMPDPRLDQLAEIVKP 60 Query: 61 ERILPATVEFVDIAGLVAGASKGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGRVS 120 +R LP T+EFVDIAGLV GASKGEGLGNQFL++IRET+AI +VVRCFE+ N+IHV+G+V+ Sbjct: 61 QRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVSGKVN 120 Query: 121 PLDDIAVIQTELALADMGTVEKAIHREQKKARSGDKDAAKLVALLERIMPALDEAKPVRA 180 P DDI VI TELALAD+ T E+AIHR QKKA+ GDKDA +A+LE+ +P L+ A +RA Sbjct: 121 PADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKAELAVLEKCLPQLENAGMLRA 180 Query: 181 LGLDAEEMLLIKPLCLITAKPAMYVANVSDSGFTDNPLLDQLTAYAKEQNAPIVAICAAI 240 L L AEE I+ L +T KP MY+ANV++ GF +NP LDQ+ A ++ + +V +CAA+ Sbjct: 181 LDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPYLDQVREIAAKEGSVVVPVCAAV 240 Query: 241 EAEIADLDDADKADFLADMGMEEPGLDRLIRAAFRLLGLQTYFTAGVKEVRAWTVPVGAT 300 EA+IA+LDD ++ +F+ ++G+EEPGL+R+IRA ++LL LQTYFTAGVKEVRAWT+PVGAT Sbjct: 241 EADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKLLNLQTYFTAGVKEVRAWTIPVGAT 300 Query: 301 GPQAAGVIHTDFERGFIRAQTIAFEDFIAFKGEAGAKEAGKMRAEGKEYVVKDGDVMNFL 360 PQAAG IHTDFE+GFIRAQTI+FEDFI +KGE GAKEAGKMRAEGK+Y+VKDGDVMNFL Sbjct: 301 APQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQGAKEAGKMRAEGKDYIVKDGDVMNFL 360 Query: 361 FNV 363 FNV Sbjct: 361 FNV 363