BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0116.p         (158 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2960 [Q] COG1463 ABC-type transport system involved in resist...   217   7e-57
NMB1964 [Q] COG1463 ABC-type transport system involved in resist...   166   2e-41
NMA0487 [Q] COG1463 ABC-type transport system involved in resist...   166   2e-41
HI1085 [Q] COG1463 ABC-type transport system involved in resista...   145   3e-35
PM0176 [Q] COG1463 ABC-type transport system involved in resista...   140   2e-33

>RSc2960 [Q] COG1463 ABC-type transport system involved in resistance to
           organic solvents, periplasmic component Rso Ralstonia
           solanacearum
          Length = 173

 Score =  217 bits (553), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 127/149 (85%), Gaps = 1/149 (0%)

Query: 1   MQRKSLDAWVGIFVLLGVAALVFLALKAGNMSSMSFGQKTYTIKASFDNIGGLKSRAAVK 60
           M++  LD WVG+FVL+G+ AL+FLALKAGNMS+ SF  KTY ++A+FDNIGGLK RA VK
Sbjct: 1   MRKSLLDFWVGLFVLVGLIALLFLALKAGNMSAFSFA-KTYQVRAAFDNIGGLKVRAPVK 59

Query: 61  SAGVVVGRVDSIRFDDQTFRAVVSLNMDESYKFPKDSSAKILTSGLLGEQYIGIEPGGDT 120
           SAGVVVGRV  I FDD++++A V L+MD+ Y+FPKDSSAKILTSGLLGEQY+G+EPGGD+
Sbjct: 60  SAGVVVGRVSQILFDDKSYQATVVLDMDQRYQFPKDSSAKILTSGLLGEQYVGLEPGGDS 119

Query: 121 ANLASGDTIKMTQSAIVLENLIGQFLYSK 149
           A LA G  I MTQSA+VLENLI QFLYSK
Sbjct: 120 AMLAGGSKITMTQSAVVLENLISQFLYSK 148


>NMB1964 [Q] COG1463 ABC-type transport system involved in resistance to
           organic solvents, periplasmic component Nme Neisseria
           meningitidis MC58
          Length = 164

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 113/155 (72%)

Query: 1   MQRKSLDAWVGIFVLLGVAALVFLALKAGNMSSMSFGQKTYTIKASFDNIGGLKSRAAVK 60
           M++  L+ WVG+FVL+G AA+ FLA +    ++     KTY + A F +IGGLK  A VK
Sbjct: 1   MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVK 60

Query: 61  SAGVVVGRVDSIRFDDQTFRAVVSLNMDESYKFPKDSSAKILTSGLLGEQYIGIEPGGDT 120
           SAGV+VGRV +I  D ++++A V L++D  Y+F  D SA+ILTSGLLGEQYIG++ GGDT
Sbjct: 61  SAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDT 120

Query: 121 ANLASGDTIKMTQSAIVLENLIGQFLYSKAAEGKD 155
            NLA+GDTI +T SA+VLENLIG+F+ S A +  D
Sbjct: 121 ENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNAD 155


>NMA0487 [Q] COG1463 ABC-type transport system involved in resistance to
           organic solvents, periplasmic component NmA Neisseria
           meningitidis Z2491
          Length = 164

 Score =  166 bits (420), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/155 (54%), Positives = 113/155 (72%)

Query: 1   MQRKSLDAWVGIFVLLGVAALVFLALKAGNMSSMSFGQKTYTIKASFDNIGGLKSRAAVK 60
           M++  L+ WVG+FVL+G AA+ FLA +    ++     KTY + A F +IGGLK  A VK
Sbjct: 1   MKKNILEFWVGLFVLIGAAAVAFLAFRVAGGAAFGGSDKTYAVYADFGDIGGLKVNAPVK 60

Query: 61  SAGVVVGRVDSIRFDDQTFRAVVSLNMDESYKFPKDSSAKILTSGLLGEQYIGIEPGGDT 120
           SAGV+VGRV +I  D ++++A V L++D  Y+F  D SA+ILTSGLLGEQYIG++ GGDT
Sbjct: 61  SAGVLVGRVGAIGLDPKSYQARVRLDLDGKYQFSSDVSAQILTSGLLGEQYIGLQQGGDT 120

Query: 121 ANLASGDTIKMTQSAIVLENLIGQFLYSKAAEGKD 155
            NLA+GDTI +T SA+VLENLIG+F+ S A +  D
Sbjct: 121 ENLAAGDTISVTSSAMVLENLIGKFMTSFAEKNAD 155


>HI1085 [Q] COG1463 ABC-type transport system involved in resistance to
           organic solvents, periplasmic component Hin Haemophilus
           influenzae
          Length = 167

 Score =  145 bits (367), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 80/162 (49%), Positives = 113/162 (69%), Gaps = 6/162 (3%)

Query: 2   QRKSLDAWVGIFVLLGVAALVFLALKAGNMSSMSFGQKTYTIKASFDNIGGLKSRAAVKS 61
           Q    + WVG+F+LLG+ ALVFL L+  N+   +   K+YT+ A+FDNIGGLK RA +K 
Sbjct: 3   QTIKYEFWVGLFLLLGIGALVFLGLRVANVQGFA-ETKSYTVTATFDNIGGLKVRAPLKI 61

Query: 62  AGVVVGRVDSIRFDDQTFRAVVSLNMDESY-KFPKDSSAKILTSGLLGEQYIGIEPG--- 117
            GVV+GRV +I  D++++   VS+ +++ Y + P++SS  I TSGLLGEQYI +  G   
Sbjct: 62  GGVVIGRVSAITLDEKSYLPKVSIAINQEYNEIPENSSLSIKTSGLLGEQYIALTMGFDD 121

Query: 118 GDTANLASGDTIKMTQSAIVLENLIGQFLY-SKAAEGKDDSK 158
           GDTA L +G  I+ T SA+VLE+LIGQFLY SK ++G + S+
Sbjct: 122 GDTAMLKNGSQIQDTTSAMVLEDLIGQFLYGSKKSDGNEKSE 163


>PM0176 [Q] COG1463 ABC-type transport system involved in resistance to
           organic solvents, periplasmic component Pmu Pasteurella
           multocida
          Length = 168

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 5/150 (3%)

Query: 2   QRKSLDAWVGIFVLLGVAALVFLALKAGNMSSMSFGQKTYTIKASFDNIGGLKSRAAVKS 61
           Q +  + WVG+F+LLG+AALVFL LK  N+   S   K+Y I A+FDNIGGLK RA +K 
Sbjct: 3   QTRIYEFWVGLFLLLGMAALVFLGLKVANIQGFS-ETKSYKIHATFDNIGGLKVRAPLKV 61

Query: 62  AGVVVGRVDSIRFDDQTFRAVVSLNMDESY-KFPKDSSAKILTSGLLGEQYIGIEPG--- 117
            GVV+GRV  I  D +++  +V++ +DE Y + P+ SS  I TSGLLGEQYI +  G   
Sbjct: 62  GGVVIGRVADITLDAKSYLPIVTVAIDERYNEIPETSSLSIKTSGLLGEQYIALSIGFDD 121

Query: 118 GDTANLASGDTIKMTQSAIVLENLIGQFLY 147
           G+ A    GD +  T+SA+VLE+L+GQFLY
Sbjct: 122 GEVAMWKEGDKVVDTKSALVLEDLVGQFLY 151