BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0087.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll7378 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium... 104 2e-22 SMa0063 [K] COG2186 Transcriptional regulators Sme Sinorhizobium... 94 3e-19 AGc464 [K] COG2186 Transcriptional regulators Atu Agrobacterium ... 94 3e-19 AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium... 91 3e-18 PA5356 [K] COG2186 Transcriptional regulators Pae Pseudomonas ae... 90 4e-18 >mll7378 [K] COG2186 Transcriptional regulators Mlo Mesorhizobium loti Length = 224 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/210 (33%), Positives = 108/210 (51%), Gaps = 2/210 (0%) Query: 25 IVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGKSPTVLPLS 84 I ++I L PG LPSE ++TR VSR VREA +L+ LI +S+G+ +V L Sbjct: 8 ITQHIRVEGLGPGDLLPSEADMTRKLSVSRTVVREAFRSLSAMRLIDMSAGRRASVAKLD 67 Query: 85 KVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAIVAQMPAAL 144 S + +HG+ T+QI+ Q+ +VR +++++ LAA RT A+ + M Sbjct: 68 IGAMSMVIEHGVTTEQISVQQVYDVRRTIEMRTVALAALRRTDAEAAEIQKCAQLMRENY 127 Query: 145 GNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTR-NQQEWDSVLL 203 E D AFHEA+ +A+ NP+ S II S + T + TR ++E ++ Sbjct: 128 RAPEIVMEHDIAFHEAIARASHNPVFSLIIKAFSGVT-RRTWVIGWRTRATEEEQIKMIE 186 Query: 204 NHQNIAAAIINGNASAARRLVDIHYVDAYK 233 H +IA AII GN A + H+ + K Sbjct: 187 GHADIARAIIAGNPQLAAEHMAAHFDKSVK 216 >SMa0063 [K] COG2186 Transcriptional regulators Sme Sinorhizobium meliloti Length = 271 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/202 (32%), Positives = 100/202 (49%), Gaps = 2/202 (0%) Query: 28 YIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGKSPTVLPLSKVP 87 +I E+ L+ G SLPSEG GVSR VREA +LA LI + +G+ P V Sbjct: 58 HIRENGLQVGDSLPSEGTFAEKLGVSRSVVREAYRSLAALTLIDIGNGRRPRVAAPKADV 117 Query: 88 FSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADIDRLNAIVAQMPAALGNV 147 + + H + T Q+T QI +VR +++ + VLAA RT + + A+ M Sbjct: 118 LALVTDHAVHTDQVTIQQIFDVRRTVERRTVVLAAMRRTDKEAAEIVALAEAMQRDFDQP 177 Query: 148 EAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSVHSHTRNQQEWDSVLLN-HQ 206 D AFHEA+G+A++NP+ A+I G ++ T + +R E ++ H Sbjct: 178 VRVMEHDIAFHEAIGRASRNPMF-ALIVGSFHVVTRHTWPIGWASRGSNETRQESIDGHM 236 Query: 207 NIAAAIINGNASAARRLVDIHY 228 IA AI NG+ + + H+ Sbjct: 237 TIAQAIANGDPAKGEEAMVEHF 258 >AGc464 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 235 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 18/213 (8%) Query: 25 IVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAVSSGKSPTVLPLS 84 I R+I E++L PG LPSE L++ GVSR VREA +L+ LI V++GK TV L Sbjct: 19 ITRHIRENELAPGAKLPSELSLSQQLGVSRTVVREAFRSLSAMRLIDVNAGKRATVATLD 78 Query: 85 KVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPAD----IDRLNAIVAQM 140 S + +HG+ T+QI QI +VR +++++ LAA RT A+ +D N M Sbjct: 79 HGAMSLMFEHGIHTEQINIQQIYDVRRTIEVRTVTLAALRRTDAEALTILDHAN----NM 134 Query: 141 PAALGNVEAFSPLDAAFHEAVGQATQNPLLSAIISGISPILFDSTRSV-----HSHTRNQ 195 + + D AFH AV +A++NP+ I+ + TR S T + Sbjct: 135 ERDFSDNDRVMEHDLAFHLAVARASKNPVFELILGAFQNV----TRQTWPIGWKSRTSDA 190 Query: 196 QEWDSVLLNHQNIAAAIINGNASAARRLVDIHY 228 Q + L H I AI G+ A L+ H+ Sbjct: 191 QRLAACEL-HIAIGQAIAAGDPQTASTLMARHF 222 >AGl2736 [K] COG2186 Transcriptional regulators Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 242 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 112/230 (48%), Gaps = 13/230 (5%) Query: 13 QQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIAV 72 +QV ++ +I+ + R +AE PG LPSE ELTR + VSR VREA L GL+ Sbjct: 8 KQVSLAAKISSALRRDLAEGVFRPGDRLPSESELTREYSVSRTVVREAIAILRADGLVEA 67 Query: 73 SSGKSPTVL---PLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPAD 129 G + P +VPF++LA ++ + I++LE+R ++++A LAA R+ Sbjct: 68 RKGAGVFAIEAKPAKEVPFNDLAVGRIS----SVIELLELRTVFEVESAGLAASRRSAVQ 123 Query: 130 IDRLNAIVAQMPAALGNVEAFSPLDAAFHEAVGQATQN----PLLSAIISGISPILFDST 185 ++ + ++ LG D FH A+ QATQN L I SGI P Sbjct: 124 VEAIVDAHRRVGDCLGAGLPTRDADFEFHLAIAQATQNRRFPEFLQLIRSGIIP--RGEL 181 Query: 186 RSVHSHTRNQQEWDSVLLNHQNIAAAIINGNASAARRLVDIHYVDAYKRY 235 + +R + + H I AII G+A AAR+ + H + +RY Sbjct: 182 QGAAPGSRPKDYNLHLQEEHAKIVDAIIEGDADAARQYMAAHLRGSLERY 231 >PA5356 [K] COG2186 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 251 Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 5/179 (2%) Query: 12 LQQVRISDQIADHIVRYIAEHKLEPGQSLPSEGELTRLFGVSRPTVREATNALAGRGLIA 71 +Q+ R++DQ+A+ I R I + L+ GQ+LPSE L G SR +RE AL GRG+I Sbjct: 1 MQKQRVADQVAERIERLIVDGVLKVGQALPSERRLVAKLGCSRSALREGLRALRGRGIID 60 Query: 72 VSSGKSPTVLPLSKVPFSNLAQHGLATQQITPIQILEVRHSLDLQAAVLAAEHRTPADID 131 G+ V L + + H +Q T +LEVR L+ +AA LAA T AD Sbjct: 61 TEHGRGSFVADLDRNADVSPLMHLFGSQPRTLYDLLEVRALLEGEAARLAALRGTEADFV 120 Query: 132 RLNAIVAQMPAALGNVEAFSP-----LDAAFHEAVGQATQNPLLSAIISGISPILFDST 185 L +M A+ + P D AFH A+ +A+ NP+L + ++ +L + Sbjct: 121 LLARRYEEMLASHEETQPIDPREHARRDHAFHRAISEASHNPVLVHTLQSLNELLLSTV 179