BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0074.p         (96 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    85   4e-17
RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral...    79   3e-15
STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal...    78   6e-15
Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escher...    77   8e-15
ECs2026 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Esc...    77   8e-15

>RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 543

 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/66 (63%), Positives = 56/66 (84%)

Query: 1   VTDVVTEISAASREXSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERA 60
           VT++V+EISA+SRE S GIEQ+N+AI+ MD++TQENA+LVEE+  AAQ+LQ+QA QL   
Sbjct: 448 VTNIVSEISASSREQSDGIEQINEAITQMDKATQENASLVEESATAAQALQDQANQLADM 507

Query: 61  VNVFKL 66
           V+ FKL
Sbjct: 508 VSTFKL 513


>RSc3412 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia
           solanacearum
          Length = 515

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/66 (62%), Positives = 54/66 (81%)

Query: 1   VTDVVTEISAASREXSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERA 60
           V+++V EIS+AS E S G+ QV QA+S MD++TQ+NAALVE++ AAA SLQ QA+QL +A
Sbjct: 448 VSNIVAEISSASAEQSSGVSQVGQAVSQMDEATQQNAALVEQSAAAASSLQGQAQQLVQA 507

Query: 61  VNVFKL 66
           V VFKL
Sbjct: 508 VAVFKL 513


>STM1626 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella
           typhimurium LT2
          Length = 541

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/74 (58%), Positives = 60/74 (81%), Gaps = 1/74 (1%)

Query: 1   VTDVVTEISAASREXSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERA 60
           VTD++ +I+AAS E S GI QV+QAIS MD+ TQ+NA+LVEEA+AAA+SL+EQA +L +A
Sbjct: 464 VTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASAAARSLEEQAARLTQA 523

Query: 61  VNVFKLRQEAGAIL 74
           V+ F+L  + GA +
Sbjct: 524 VDAFRL-HDTGATM 536


>Ztrg [NT] COG0840 Methyl-accepting chemotaxis protein EcZ Escherichia
           coli O157:H7 EDL933
          Length = 546

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 1   VTDVVTEISAASREXSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERA 60
           VT ++ EI+AAS E S GI QV+QAIS MD+ TQ+NA+LVEEA+AAA SL+EQA +L  A
Sbjct: 460 VTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEA 519

Query: 61  VNVFKLRQEA 70
           V+VF+L +++
Sbjct: 520 VDVFRLNKQS 529


>ECs2026 [NT] COG0840 Methyl-accepting chemotaxis protein Ecs Escherichia
           coli O157:H7
          Length = 546

 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 57/70 (81%)

Query: 1   VTDVVTEISAASREXSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERA 60
           VT ++ EI+AAS E S GI QV+QAIS MD+ TQ+NA+LVEEA+AAA SL+EQA +L  A
Sbjct: 460 VTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVSLEEQAARLTEA 519

Query: 61  VNVFKLRQEA 70
           V+VF+L +++
Sbjct: 520 VDVFRLNKQS 529