BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0073.p (379 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 185 1e-46 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 174 3e-43 RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 173 7e-43 STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 168 2e-41 RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 167 3e-41 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 185 bits (470), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/258 (45%), Positives = 165/258 (63%), Gaps = 15/258 (5%) Query: 123 FDKSLAEALKLANAGQWNEARALLANNQPVI-DR---LNKAMTELRA--YNEKISQAGAH 176 + S+ + L +A EARAL + + DR L M + +A +S+A A Sbjct: 125 YGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEHDVSEAAAQ 184 Query: 177 RAQETMAAARLHAILIS--AAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREI 234 A A++ I+++ A ++A+ T G I R I R + A+ LAE +A+G+LT + Sbjct: 185 GAN-----AKIQMIVLAVLATLLAIAT--GAFITRTITRPINHAMHLAEAVAQGNLTHLL 237 Query: 235 DISSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASS 294 ++ + DEIG L+AA+ M NL IV+ VR G +T+ ASS++A+GN+DLS+RTEQQASS Sbjct: 238 EVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQASS 297 Query: 295 LEQTAAATEELTSTVKQNAENALQADLLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNI 354 LE+TAAA E+LTSTVKQNA+NA +A LAS AS +A +GG+ V + + TM I +SS I Sbjct: 298 LEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRKI 357 Query: 355 ADIISVIDGIAFQTNILA 372 DII VIDGIAFQTNILA Sbjct: 358 VDIIGVIDGIAFQTNILA 375 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 174 bits (441), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/283 (40%), Positives = 165/283 (58%), Gaps = 8/283 (2%) Query: 93 EDALQKYEQEQLADATDKELLRAVRVSYQEFDKSLAEALKLANAGQWNEARALLANNQPV 152 ED ++YE+ + D E + ++ SY+E+ +L E + L + NE N P Sbjct: 102 EDRFKRYEKIPQNSSQDPEGAKKLKQSYEEYFSALTELINLMETNKINEFF-----NHPT 156 Query: 153 IDRLNKAMTELRAY---NEKISQAGAHRAQETMAAARLHAILISAAVIAVVTLMGLLIAR 209 N+ Y N+ + + + ++ + A I + V+ ++ L+ L + + Sbjct: 157 TSFQNEFEQNYNNYLTQNDGLYDSAVEDSNQSFSFAMGVVITVLVVVLVMMLLVWLGMQQ 216 Query: 210 KIARSLAEAVELAETIAEGDLTREIDISSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNT 269 + L + + IA GDLT+ I++ +E+G L A++ M LVTIV VR G + Sbjct: 217 ILIHPLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADA 276 Query: 270 VAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTVKQNAENALQADLLASAASGI 329 + + +S+IA GN DLSARTEQQA+SLE+TAA+ E+LT+TVKQNAENA QA LA +AS Sbjct: 277 IYSGASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASET 336 Query: 330 AAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTNILA 372 A +GG+VV VV TM EI SS IADI SVIDGIAFQTNILA Sbjct: 337 AQKGGKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILA 379 >RSc1950 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 329 Score = 173 bits (438), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 99/183 (54%), Positives = 122/183 (66%) Query: 190 ILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDLTREIDISSTDEIGHLMAAM 249 I +S A + V G+LI R I R + +AV +AET+A GDL ID TDE H +AA+ Sbjct: 83 IALSIAAVLVAIGAGVLITRSITRPIGKAVNVAETVARGDLGSRIDAEGTDETSHRLAAL 142 Query: 250 AKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAAATEELTSTV 309 A MN L IV VR ++A A+ IA GN DLS RTE QASSL++TAA EELTSTV Sbjct: 143 ADMNTRLTQIVDKVRDSSGSIAGAARPIAAGNADLSQRTEAQASSLQETAAGMEELTSTV 202 Query: 310 KQNAENALQADLLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISVIDGIAFQTN 369 KQNA+NA A LA+ AS +A +G VV QVV+TM+ I S IA+I S+I+GIAFQTN Sbjct: 203 KQNADNAQHATELAATASEVAQKGNAVVSQVVSTMQAISDRSGKIAEITSIIEGIAFQTN 262 Query: 370 ILA 372 ILA Sbjct: 263 ILA 265 >STM4533 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 553 Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/262 (41%), Positives = 156/262 (59%), Gaps = 12/262 (4%) Query: 116 VRVSYQEFDKSLAEALKLANAGQWNEARALLANNQPVIDRLNKAMTELRAY---NEKISQ 172 ++ +Y + +LAE ++L AG+ NE +QP + + AY N+++ Sbjct: 125 IKRTYDIYHGALAELIQLLGAGKINEFF-----DQPTQSYQDAFEKQYMAYMQQNDRLYD 179 Query: 173 AGA--HRAQETMAAARLHAILISAAVIAVVTLMGLLIARKIARSLAEAVELAETIAEGDL 230 + + A L ++LI+ V+ + G+ ++ + + +E IA GDL Sbjct: 180 IAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLS--LIAPMNRLIESIRHIASGDL 237 Query: 231 TREIDISSTDEIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQ 290 + ID+ ++E+G L + M L+ V VR G N + + +S+IA GN DLS+RTEQ Sbjct: 238 VKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANAIYSGASEIAMGNNDLSSRTEQ 297 Query: 291 QASSLEQTAAATEELTSTVKQNAENALQADLLASAASGIAAEGGEVVKQVVTTMEEIRSS 350 QA+SLE+TAA+ E+LT+TVKQNAENA QA LA +AS A +GG+VV VV TM +I SS Sbjct: 298 QAASLEETAASMEQLTATVKQNAENARQASHLALSASETAQKGGKVVDNVVQTMRDIASS 357 Query: 351 SLNIADIISVIDGIAFQTNILA 372 S IADIISVIDGIAFQTNILA Sbjct: 358 SQKIADIISVIDGIAFQTNILA 379 >RSc1460 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 513 Score = 167 bits (424), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 97/192 (50%), Positives = 129/192 (67%), Gaps = 2/192 (1%) Query: 183 AAARLHAILISAAVIAVVTLMGL--LIARKIARSLAEAVELAETIAEGDLTREIDISSTD 240 A AR+ ++I+A V+A+V G L+ R I L + + IA GDLT+ + I D Sbjct: 183 AYARIRNLVIAAIVLALVVSAGCAWLLLRAIVGPLNATLAQFDRIAAGDLTQPVRIDRRD 242 Query: 241 EIGHLMAAMAKMNRNLVTIVATVRTGVNTVAAASSQIATGNMDLSARTEQQASSLEQTAA 300 E+GHL+ +A+M L V VR G ++ AA+ QIA GN DLS RTE QASSLE+TA+ Sbjct: 243 EMGHLLEGLARMQAALTDTVRRVRHGSESIGAATKQIAAGNADLSQRTEGQASSLEETAS 302 Query: 301 ATEELTSTVKQNAENALQADLLASAASGIAAEGGEVVKQVVTTMEEIRSSSLNIADIISV 360 + EE+TS V+QNA+NA QA LA +AS +A++GG VV VV TM EI +SS +++II V Sbjct: 303 SMEEMTSIVRQNADNARQASQLADSASAVASQGGAVVTDVVATMREISASSRTVSEIIGV 362 Query: 361 IDGIAFQTNILA 372 IDGIAFQTNILA Sbjct: 363 IDGIAFQTNILA 374