BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0060.p         (98 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport...   131   3e-31
DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport...   121   4e-28
AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport...   109   1e-24
alr2541 [E] COG0410 ABC-type branched-chain amino acid transport...   108   4e-24
Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport...   102   2e-22

>RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 247

 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/89 (69%), Positives = 75/89 (84%)

Query: 1   MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 60
           +MAKPQLLMLDEPSLGLAP IVKEI HI+S LR+ G++ LL+EQNARAALQ ADYGYVLE
Sbjct: 157 LMAKPQLLMLDEPSLGLAPLIVKEIFHIISNLRSTGVATLLIEQNARAALQVADYGYVLE 216

Query: 61  LGKVTLQGESAQLAGDPQVIQAYLGFGKK 89
            G +TL+G + +LA +P+VI+ YLG  KK
Sbjct: 217 TGDMTLEGPARELAVNPRVIETYLGLAKK 245


>DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 238

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 74/85 (87%)

Query: 1   MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 60
           +MA+P+LL+LDEPSLGLAP IV++ILHIV+ELR +G++VLLVEQNARAAL  +DYGYVLE
Sbjct: 153 LMARPKLLLLDEPSLGLAPLIVRDILHIVAELRDSGVTVLLVEQNARAALAISDYGYVLE 212

Query: 61  LGKVTLQGESAQLAGDPQVIQAYLG 85
            G V L+G +A+LA DP V+ +YLG
Sbjct: 213 GGHVKLEGPAARLADDPAVVASYLG 237


>AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 240

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/89 (60%), Positives = 72/89 (80%)

Query: 1   MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 60
           +M++P+LL+LDEPSLGLAP IV EIL IV+ELR  G+S+LLVEQNARAAL+ AD  Y++E
Sbjct: 150 LMSRPRLLLLDEPSLGLAPLIVAEILRIVAELRRTGVSILLVEQNARAALEIADEAYLVE 209

Query: 61  LGKVTLQGESAQLAGDPQVIQAYLGFGKK 89
           LG+V   G +A+LA DP ++ +YLG G+ 
Sbjct: 210 LGEVRRSGPAAELAVDPALMASYLGPGEH 238


>alr2541 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Nos Nostoc sp. PCC 7120
          Length = 264

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 65/85 (76%)

Query: 1   MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 60
           +M++PQLL+LDEPSLGLAP IV+EI  I+  LR  G+++LLVEQNA  ALQ AD GYVLE
Sbjct: 180 LMSRPQLLLLDEPSLGLAPAIVREIFSIIENLRATGVTILLVEQNANLALQIADRGYVLE 239

Query: 61  LGKVTLQGESAQLAGDPQVIQAYLG 85
            G +TL G ++ L  D +V +AYLG
Sbjct: 240 AGSITLSGAASNLINDERVKKAYLG 264


>Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Cje Campylobacter jejuni
          Length = 231

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 66/86 (76%)

Query: 1   MMAKPQLLMLDEPSLGLAPRIVKEILHIVSELRTAGISVLLVEQNARAALQTADYGYVLE 60
           +M++P+LLMLDEPSLGLAP+IV E+  I+  L+  GI++LLVEQNA +AL+ +DY YVLE
Sbjct: 146 LMSEPKLLMLDEPSLGLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLE 205

Query: 61  LGKVTLQGESAQLAGDPQVIQAYLGF 86
            G++ ++ E+  L GD ++ + YLG 
Sbjct: 206 NGRIVMENEAKNLIGDDEIRKKYLGL 231