BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0045.p (235 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2254 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum 354 1e-97 AGl1055GM [I] COG1788 Acyl CoA Atu Agrobacterium tumefaciens str... 250 2e-66 jhp0637 [I] COG1788 Acyl CoA jHp Helicobacter pylori J99 211 1e-54 CC0206 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides 209 4e-54 HP0691 [I] COG1788 Acyl CoA Hpy Helicobacter pylori 26695 209 5e-54 >RSc2254 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum Length = 229 Score = 354 bits (908), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 177/235 (75%), Positives = 194/235 (82%), Gaps = 11/235 (4%) Query: 1 VINKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAXTVTAARARARARARART 60 +INKI S+E A+ADI DGATIMIGGFG AGMP+ALID LIA AR T Sbjct: 1 MINKICLSVEAALADIPDGATIMIGGFGTAGMPAALIDGLIAHG-----------ARELT 49 Query: 61 IVNNNAGNGETGLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAER 120 I+NNNAGNGETGLAALLK +RV+KIVCSFPRQSDS VFDALYR+GEIELEL PQGNLAER Sbjct: 50 IINNNAGNGETGLAALLKARRVRKIVCSFPRQSDSYVFDALYRAGEIELELVPQGNLAER 109 Query: 121 IRAAGAGIGGFFSPTGYGTMLAEGKDTREINGRHYVLESPIHADFALIKALRGDRWGNLV 180 IRAAGAGIGGFF PT YGT LAEGK+TR I+G+ YV E P+ AD+ALIKALRGDRWGNLV Sbjct: 110 IRAAGAGIGGFFCPTAYGTQLAEGKETRIIDGKPYVFELPLTADYALIKALRGDRWGNLV 169 Query: 181 YRKTARNFGPIMAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 235 YRKTARNFGP+MAMAAKCTIA+V VELG LDPE+IVTPGIFV+RIV A Q Sbjct: 170 YRKTARNFGPVMAMAAKCTIAEVDATVELGALDPEHIVTPGIFVKRIVPVGAAAQ 224 >AGl1055GM [I] COG1788 Acyl CoA Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 235 Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/234 (53%), Positives = 159/234 (67%), Gaps = 11/234 (4%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAXTVTAARARARARARARTI 61 ++K S E+A++ I DGATIMIGGFG +G P LI ALI + T+ Sbjct: 1 MDKTIKSAEEALSSIGDGATIMIGGFGGSGAPIELIHALI-----------DKGPKNLTV 49 Query: 62 VNNNAGNGETGLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERI 121 +NNNAGNG G+AA++ VKK++CSFPR SD + F Y +GEIELEL PQG LAERI Sbjct: 50 INNNAGNGRIGIAAMIDAGMVKKMICSFPRSSDPRAFTDRYLAGEIELELVPQGTLAERI 109 Query: 122 RAAGAGIGGFFSPTGYGTMLAEGKDTREINGRHYVLESPIHADFALIKALRGDRWGNLVY 181 RA GAGI F++PTG+GT LA GK E +GR YV E + ADFA++KA GD +GNL Y Sbjct: 110 RAGGAGIPAFYTPTGFGTELANGKVIAEFDGRSYVQERWLKADFAIVKAELGDTYGNLTY 169 Query: 182 RKTARNFGPIMAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 235 K RNF P+M MAAK TIAQVS +V G++DPE++VTPGIFV +V+ + QQ Sbjct: 170 NKAGRNFNPLMCMAAKTTIAQVSRIVAAGEIDPEHVVTPGIFVNGVVEIPDPQQ 223 >jhp0637 [I] COG1788 Acyl CoA jHp Helicobacter pylori J99 Length = 232 Score = 211 bits (537), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 102/234 (43%), Positives = 157/234 (67%), Gaps = 13/234 (5%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAXTVTAARARARARARARTI 61 +NK+ L++A++ + DG TI++GGFG G+P ID + + + + Sbjct: 1 MNKVITDLDKALSGLKDGDTILVGGFGLCGIPEYAIDYIYKKGI-----------KDLIV 49 Query: 62 VNNNAGNGETGLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERI 121 V+NN G + GL LL+ K++KKI+ S+ ++++F++ +GEIE+ LTPQG LAE + Sbjct: 50 VSNNCGVDDFGLGILLEKKQIKKIIASY--VGENKIFESQMLNGEIEVVLTPQGTLAENL 107 Query: 122 RAAGAGIGGFFSPTGYGTMLAEGKDTREINGRHYVLESPIHADFALIKALRGDRWGNLVY 181 RA GAGI +++PTG GT++A+GK++RE NG+ Y+LE I D+ LIKA + D GNLV+ Sbjct: 108 RAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVF 167 Query: 182 RKTARNFGPIMAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 235 RKTARNF P+ AMAAK +A+V E+V G+LDP+ I PGI+VQ I + ++ ++ Sbjct: 168 RKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEK 221 >CC0206 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides Length = 236 Score = 209 bits (532), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 154/230 (66%), Gaps = 14/230 (6%) Query: 1 VINKIS-DSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAXTVTAARARARARARAR 59 +++K+ D++E + DG TIM GGFG G+P LI A+ A + Sbjct: 1 MVDKVKKDAVEALAGLLFDGMTIMAGGFGLCGIPENLIAAI-----------REAGTKDL 49 Query: 60 TIVNNNAGNGETGLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAE 119 T+++NN G GL LL+ +++KK+V S+ ++++F+ LY SGE+ELE PQG LAE Sbjct: 50 TVISNNCGVDGFGLGILLENRQIKKMVSSYV--GENKLFEQLYLSGELELEFNPQGTLAE 107 Query: 120 RIRAAGAGIGGFFSPTGYGTMLAEGKDTREINGRHYVLESPIHADFALIKALRGDRWGNL 179 RIRA GAGI FF+ TGYGT++AEGK+TRE +G YV+E + AD +++KA + D GNL Sbjct: 108 RIRAGGAGIPAFFTRTGYGTLVAEGKETREFDGEMYVMERGLTADLSIVKAWKADAEGNL 167 Query: 180 VYRKTARNFGPIMAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQ 229 +YRKTARNF P+MA A K T+ +V E+V +G+LD + I TPGI+V R+++ Sbjct: 168 IYRKTARNFNPMMATAGKKTVVEVEELVAIGELDKDAIHTPGIYVDRLIK 217 >HP0691 [I] COG1788 Acyl CoA Hpy Helicobacter pylori 26695 Length = 232 Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 156/234 (66%), Gaps = 13/234 (5%) Query: 2 INKISDSLEQAVADIHDGATIMIGGFGNAGMPSALIDALIAXTVTAARARARARARARTI 61 +NK+ L++A++ + DG TI++GGFG G+P ID + + + + Sbjct: 1 MNKVITDLDKALSALKDGDTILVGGFGLCGIPEYAIDYIYKKGI-----------KDLIV 49 Query: 62 VNNNAGNGETGLAALLKTKRVKKIVCSFPRQSDSQVFDALYRSGEIELELTPQGNLAERI 121 V+NN G + GL LL+ K++KKI+ S+ ++++F++ +GEIE+ LTPQG LAE + Sbjct: 50 VSNNCGVDDFGLGILLEKKQIKKIIASY--VGENKIFESQMLNGEIEVVLTPQGTLAENL 107 Query: 122 RAAGAGIGGFFSPTGYGTMLAEGKDTREINGRHYVLESPIHADFALIKALRGDRWGNLVY 181 A GAGI +++PTG GT++A+GK++RE NG+ Y+LE I D+ LIKA + D GNLV+ Sbjct: 108 HAGGAGIPAYYTPTGVGTLIAQGKESREFNGKEYILERAITGDYGLIKAYKSDTLGNLVF 167 Query: 182 RKTARNFGPIMAMAAKCTIAQVSEVVELGQLDPENIVTPGIFVQRIVQTKEAQQ 235 RKTARNF P+ AMAAK +A+V E+V G+LDP+ I PGI+VQ I + ++ ++ Sbjct: 168 RKTARNFNPLCAMAAKICVAEVEEIVPAGELDPDEIHLPGIYVQHIYKGEKFEK 221