BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0043.p (288 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport... 370 e-102 BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transpo... 227 2e-59 AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport ... 215 9e-56 SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transpor... 201 1e-51 AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport... 139 1e-32 >RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 289 Score = 370 bits (950), Expect = e-102, Method: Compositional matrix adjust. Identities = 223/284 (78%), Positives = 251/284 (88%), Gaps = 2/284 (0%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLAT 65 LGVLFDG+AYG LLFLI +GLSVTMG+M FINLAHGAFAM GGYVCV L+N +G+PFLAT Sbjct: 5 LGVLFDGLAYGCLLFLIGIGLSVTMGLMRFINLAHGAFAMAGGYVCVVLMNRLGMPFLAT 64 Query: 66 LPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 LP+AF+A A G VLER+LYRRLY+AS LDQVLFSI L FMA+AGAT+ WGP+QQPV LP Sbjct: 65 LPIAFLATAAAGFVLERTLYRRLYRASPLDQVLFSIALVFMAMAGATYVWGPSQQPVELP 124 Query: 126 DWLRGQISLL--GLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGL 183 D LRGQ+ + GLEVG YR+FL+GVVV++T L LIERTRFGA++RASVDNQ AAAGL Sbjct: 125 DALRGQLRVFDTGLEVGRYRLFLVGVVVVLTALLAWLIERTRFGARVRASVDNQQAAAGL 184 Query: 184 GINVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPL 243 GINV VFS+TFALGSGLAGLGGGLGIDVLGLDP FP+KYMVYFLLVVAVGGAG+IKG L Sbjct: 185 GINVGLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTL 244 Query: 244 LAALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRRR 287 LAAL+LGVFDVAGKYYVPE+GAFVIYGLMV+LL LFP GL+ RR Sbjct: 245 LAALVLGVFDVAGKYYVPEVGAFVIYGLMVLLLALFPGGLLGRR 288 >BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 289 Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 123/281 (43%), Positives = 181/281 (64%) Query: 6 LGVLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLAT 65 L + D +AYG +LF+IS+GLSVTMG+M +NLAHGAFAM+GGY +G+ + Sbjct: 5 LSIAVDALAYGMVLFVISIGLSVTMGLMRVVNLAHGAFAMIGGYFASYAAQQLGLNYGFA 64 Query: 66 LPLAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLP 125 + +A + I+ + +ER LYRR+Y A L QVL +IG+TF + + +GPT + + LP Sbjct: 65 IIIAVVGTMIIAVPVERLLYRRIYGAPELTQVLMTIGVTFCIIGITNYIFGPTLKTIPLP 124 Query: 126 DWLRGQISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGI 185 + LRG + L + +R+F IG + V V L +ERT FG ++RA+VDN AA LG+ Sbjct: 125 EMLRGSVDLGFRAIAKHRIFAIGCGLAVAVGLWYAVERTAFGVKLRAAVDNANMAAALGV 184 Query: 186 NVSRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLA 245 V++++FAL GLA GG +G ++L ++P + ++YMV FL+VV+VG AG+I G L+A Sbjct: 185 RTEIVYAVSFALAIGLAAFGGVVGAELLPVEPYYALRYMVTFLVVVSVGRAGSIPGALVA 244 Query: 246 ALILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRR 286 L+LG D G+Y PE G F Y ++V++ LFP GL R Sbjct: 245 CLLLGAIDTTGRYLAPEYGEFFFYLAVIVIVTLFPRGLAGR 285 >AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 311 Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 121/279 (43%), Positives = 183/279 (65%) Query: 8 VLFDGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLATLP 67 +L D +AYG +LF+IS+GLSVTMG+M +NLAHGAFAM+GGY+ +G+G+ + + Sbjct: 31 ILIDALAYGMVLFIISIGLSVTMGLMRVVNLAHGAFAMIGGYLASYAAHGLGLGYAMAIL 90 Query: 68 LAFIAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDW 127 +A + ++ + LER LYRR+Y A L QVL +IG+TF + A + +GPT + + LP Sbjct: 91 VAIVGTIVIAIPLERFLYRRIYGAPELTQVLMTIGITFCIIGIANYVFGPTLKTIPLPQQ 150 Query: 128 LRGQISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINV 187 L G L + +R+F I + V AL E+T FG ++RA+VDN AA LG+ Sbjct: 151 LAGPTDLGFRTIATHRIFAIACGLAVAGALWFTFEKTAFGIKLRAAVDNAAMAAALGVRT 210 Query: 188 SRVFSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAAL 247 +++++FA+ GLA +GG +G ++L ++P + ++YMV FL+VV+VGGAG+I G L+A L Sbjct: 211 EIIYAVSFAIAVGLAAMGGVIGAELLPVEPYYALRYMVTFLVVVSVGGAGSIPGALIACL 270 Query: 248 ILGVFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRR 286 +LG D G+Y PE G F Y ++V++ LFP GL+ R Sbjct: 271 LLGAIDTTGRYLAPEYGEFFFYLAVIVIITLFPRGLLGR 309 >SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 287 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 117/276 (42%), Positives = 177/276 (64%) Query: 11 DGIAYGSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLATLPLAF 70 D +AYG++LF+IS+GLSVT+G+M +NLAHGAFAM+GGY+ +G+ + A + +A Sbjct: 10 DALAYGTVLFVISIGLSVTLGLMRVVNLAHGAFAMIGGYIASYAARDLGLGYGAAVLIAV 69 Query: 71 IAAAIVGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRG 130 ++ + +ER LYRR+Y L QVL +IG+TF + A + +GPT + + LP L G Sbjct: 70 FGTIVIAIPIERLLYRRIYGQPELTQVLMTIGITFCIIGIANYVFGPTLKTIPLPPSLEG 129 Query: 131 QISLLGLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRV 190 L + +R+F I + V AL IE+T FG ++RA+VDN AA LG+ V Sbjct: 130 SADLGFRSIAVHRIFAIVCGLAVAGALWFAIEKTAFGVKLRAAVDNAAMAAALGVRTEVV 189 Query: 191 FSLTFALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILG 250 ++++FA+ GLA GG +G ++L ++P + ++YMV FL+VV+VGGAG+I G L A L+LG Sbjct: 190 YAVSFAVAVGLAAFGGVVGAELLPVEPYYALRYMVTFLVVVSVGGAGSIPGALAACLLLG 249 Query: 251 VFDVAGKYYVPEIGAFVIYGLMVVLLILFPAGLMRR 286 D G+Y +PE G F Y ++ ++ +FP GL R Sbjct: 250 GIDTTGRYLMPEFGEFFFYLAVIAIVCVFPRGLAGR 285 >AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 145/271 (53%) Query: 16 GSLLFLISVGLSVTMGMMNFINLAHGAFAMLGGYVCVTLLNGMGVPFLATLPLAFIAAAI 75 GS L+S+GL+V G++ IN AHGA MLG +V L G+ F L + + A+ Sbjct: 23 GSFYALLSLGLAVIFGLLRVINFAHGAQYMLGAFVAFLGLQYFGINFWMALIVTPLVVAL 82 Query: 76 VGLVLERSLYRRLYKASHLDQVLFSIGLTFMAVAGATWQWGPTQQPVVLPDWLRGQISLL 135 G ++ER + RLY L +LF+ GL + W +G QP +P L G +L Sbjct: 83 FGAIVERFMLSRLYDLDPLYGLLFTFGLALVVEGTFRWLYGAAGQPYSVPRELAGGTNLG 142 Query: 136 GLEVGAYRVFLIGVVVIVTVALGLLIERTRFGAQIRASVDNQVAAAGLGINVSRVFSLTF 195 + + YR F++ + ++ +A LIE+TR G+ +RA+ +N GINV + +LT+ Sbjct: 143 FMFLPNYRAFVVVISLVACIATWALIEKTRLGSYLRAATENPTLVQAFGINVPVLLTLTY 202 Query: 196 ALGSGLAGLGGGLGIDVLGLDPTFPVKYMVYFLLVVAVGGAGTIKGPLLAALILGVFDVA 255 ALG+GLAG G L + + P ++ VV VGG G+I G ++ +LG+ + Sbjct: 203 ALGAGLAGFTGVLAAPIYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGL 262 Query: 256 GKYYVPEIGAFVIYGLMVVLLILFPAGLMRR 286 K + PE VI+ +M +L++ PAGL + Sbjct: 263 TKVFYPEASNIVIFVIMAFVLLIRPAGLFGK 293