BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0015.p (247 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0409 [R] COG1137 ABC-type (unclassified) transport system, AT... 373 e-103 NMB0356 [R] COG1137 ABC-type (unclassified) transport system, AT... 324 1e-88 NMA2131 [R] COG1137 ABC-type (unclassified) transport system, AT... 320 2e-87 VC2528 [R] COG1137 ABC-type (unclassified) transport system, ATP... 306 3e-83 STM3319 [R] COG1137 ABC-type (unclassified) transport system, AT... 304 1e-82 >RSc0409 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Rso Ralstonia solanacearum Length = 262 Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust. Identities = 184/246 (74%), Positives = 216/246 (87%) Query: 2 AASSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGE 61 +S+LVVR LKK YG R VV+DVS++V+SGEVVGLLGPNGAGKTTSFYMIVGLV D G+ Sbjct: 17 TSSTLVVRHLKKRYGTRTVVKDVSLDVKSGEVVGLLGPNGAGKTTSFYMIVGLVALDAGD 76 Query: 62 IDLDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIE 121 I LDG+ ISRL IH+RA +GLSYLPQEASVFRKL V++NIRAVLEL+++DGKPLS E+ Sbjct: 77 IVLDGQHISRLPIHQRARMGLSYLPQEASVFRKLNVQENIRAVLELQEQDGKPLSSTEVN 136 Query: 122 GRLNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIE 181 RL+ LL +LQI LR++ ALSLSGGERRRVEIARALA+ PRF+LLDEPFAG+DPIAV E Sbjct: 137 RRLDALLDDLQIAHLRDNPALSLSGGERRRVEIARALASSPRFILLDEPFAGVDPIAVGE 196 Query: 182 IQRIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYL 241 IQRIV FLK+R IGVLITDHNVRETLGICD AYII++GTVLA+G PE+I+ NE VR+VYL Sbjct: 197 IQRIVSFLKDRNIGVLITDHNVRETLGICDHAYIISEGTVLAAGMPEQIVENEDVRKVYL 256 Query: 242 GEHFRM 247 G++FRM Sbjct: 257 GDNFRM 262 >NMB0356 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Nme Neisseria meningitidis MC58 Length = 254 Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 158/243 (65%), Positives = 196/243 (80%), Gaps = 5/243 (2%) Query: 4 SSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEID 63 S LVV+ L+KS+ RQVV+ S+E+ SGEV+GLLGPNGAGKTTSFYMIVGL+ +D G + Sbjct: 16 SRLVVQNLQKSFKKRQVVKSFSLEIESGEVIGLLGPNGAGKTTSFYMIVGLIAADAGSVT 75 Query: 64 LDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGR 123 LDG+ + L IH+RA LG+ YLPQEAS+FRK+TVE NIRA+LE+R +D +++I+ Sbjct: 76 LDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQNIRAILEIRTKD-----KNQIDRE 130 Query: 124 LNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQ 183 + LL +L I LR S A SLSGGERRRVEIAR LA P F+LLDEPFAG+DPIAVI+IQ Sbjct: 131 IEKLLADLNIGHLRRSPAPSLSGGERRRVEIARVLAMKPHFILLDEPFAGVDPIAVIDIQ 190 Query: 184 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 243 +I+ FLK RGIGVLITDHNVRETL ICDRAYII+ GTVLASG P++++ NE VR VYLG+ Sbjct: 191 KIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGTVLASGKPDDLVGNEQVRSVYLGK 250 Query: 244 HFR 246 +F+ Sbjct: 251 NFK 253 >NMA2131 [R] COG1137 ABC-type (unclassified) transport system, ATPase component NmA Neisseria meningitidis Z2491 Length = 254 Score = 320 bits (820), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 157/243 (64%), Positives = 194/243 (79%), Gaps = 5/243 (2%) Query: 4 SSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEID 63 S LVV+ L+KS+ RQVV+ S+E+ SGEVVGLLGPNGAGKTTSFYMIVGL+ +D G + Sbjct: 16 SRLVVQNLQKSFKKRQVVKSFSLEIESGEVVGLLGPNGAGKTTSFYMIVGLIAADAGSVM 75 Query: 64 LDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGR 123 LDG+ + L IH+RA LG+ YLPQEAS+FRK+TVE NIRA+LE+R +D +++I+ Sbjct: 76 LDGQELRHLPIHERARLGVGYLPQEASIFRKMTVEQNIRAILEIRTKD-----KNQIDRE 130 Query: 124 LNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQ 183 + LL +L I LR S SLSGGERRRVEIAR LA P F+LLDEPFAG+DPIAVI+IQ Sbjct: 131 IEKLLADLNIGHLRRSPTPSLSGGERRRVEIARVLAMKPHFILLDEPFAGVDPIAVIDIQ 190 Query: 184 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 243 +I+ FLK RGIGVLITDHNVRETL ICDRAYII+ G VLASG P++++ NE VR VYLG+ Sbjct: 191 KIIGFLKSRGIGVLITDHNVRETLSICDRAYIISDGAVLASGKPDDLVGNEQVRSVYLGK 250 Query: 244 HFR 246 +F+ Sbjct: 251 NFK 253 >VC2528 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Vch Vibrio cholerae Length = 241 Score = 306 bits (783), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 144/242 (59%), Positives = 195/242 (80%), Gaps = 4/242 (1%) Query: 6 LVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEIDLD 65 L + L KSY R+VV DVS++V SG++VGLLGPNGAGKTTSFYMIVGLV D G I +D Sbjct: 4 LKAQHLAKSYKKRKVVSDVSLQVESGQIVGLLGPNGAGKTTSFYMIVGLVARDEGTITID 63 Query: 66 GEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGRLN 125 IS L +H R+ +G+ YLPQEAS+FRKL+VEDNI AVL+ R+E L+ +E + +L Sbjct: 64 DNDISILPMHSRSRMGIGYLPQEASIFRKLSVEDNIMAVLQTREE----LTHEERQDKLE 119 Query: 126 NLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQRI 185 +LL E I+ +R+S ++LSGGERRRVEIARALA +P+F+LLDEPFAG+DPI+VI+I++I Sbjct: 120 DLLEEFHIQHIRKSAGMALSGGERRRVEIARALAANPQFILLDEPFAGVDPISVIDIKKI 179 Query: 186 VRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGEHF 245 + L++RG+GVLITDHNVRETL +C++AYI++QG ++A G P++++ NE V++VYLGE F Sbjct: 180 IEHLRDRGLGVLITDHNVRETLDVCEKAYIVSQGRLIAEGTPQDVLNNEQVKQVYLGEQF 239 Query: 246 RM 247 R+ Sbjct: 240 RL 241 >STM3319 [R] COG1137 ABC-type (unclassified) transport system, ATPase component Sty Salmonella typhimurium LT2 Length = 241 Score = 304 bits (778), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 145/244 (59%), Positives = 192/244 (78%), Gaps = 4/244 (1%) Query: 4 SSLVVRGLKKSYGARQVVRDVSMEVRSGEVVGLLGPNGAGKTTSFYMIVGLVPSDGGEID 63 ++L + L K+Y R+VV DVS+ V SGE+VGLLGPNGAGKTT+FYM+VG+VP D G I Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61 Query: 64 LDGEPISRLAIHKRATLGLSYLPQEASVFRKLTVEDNIRAVLELRQEDGKPLSRDEIEGR 123 +D E IS L +H RA G+ YLPQEAS+FR+L+V DN+ AVL++R + L+ ++ E R Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAVLQIRDD----LTAEQREDR 117 Query: 124 LNNLLHELQIEKLRESQALSLSGGERRRVEIARALATDPRFVLLDEPFAGIDPIAVIEIQ 183 N L+ E IE LR+S +LSGGERRRVEIARALA +P+F+LLDEPFAG+DPI+VI+I+ Sbjct: 118 ANELMEEFHIEHLRDSMGQALSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIK 177 Query: 184 RIVRFLKERGIGVLITDHNVRETLGICDRAYIINQGTVLASGNPEEIIANESVRRVYLGE 243 RI+ L++ G+GVLITDHNVRETL +C+RAYI++QG ++A G P EI+ +E V+RVYLGE Sbjct: 178 RIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVYLGE 237 Query: 244 HFRM 247 FR+ Sbjct: 238 DFRL 241