BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0008.p (480 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0414_2 [P] COG1226 Kef-type K+ transport systems, predicted N... 291 3e-78 RSc0414_1 [P] COG0475 Kef-type K+ transport systems, membrane co... 245 2e-64 NMB0209_1 [P] COG0475 Kef-type K+ transport systems, membrane co... 194 4e-49 NMA0060_1 [P] COG0475 Kef-type K+ transport systems, membrane co... 189 9e-48 NMB0209_2 [P] COG1226 Kef-type K+ transport systems, predicted N... 145 2e-34 >RSc0414_2 [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component Rso Ralstonia solanacearum Length = 270 Score = 291 bits (744), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 152/270 (56%), Positives = 195/270 (72%) Query: 211 NEWMLQSLALTQLATRTMGVQKHVIIAGFGRSGQSLARLLEEEGIAYHALEMDPELVQDA 270 +W++QSLA+T++A +++ ++HVII G+GRSGQ+LA +LE+E I+Y AL++DP+ V+DA Sbjct: 1 TDWLMQSLAMTKIAAQSLQTERHVIICGYGRSGQNLAHMLEQEDISYVALDLDPDRVRDA 60 Query: 271 RNGGANVSYGDAARRESLVAAGIHRAAALVVTYASTPSALKVLHHAAELEPELPVIVRSH 330 G V YGDAARRESLVAAG+HRAAA+ VTYA T SALKVLHH L P LPVIVR+ Sbjct: 61 AAAGERVVYGDAARRESLVAAGVHRAAAVAVTYADTASALKVLHHVQALAPTLPVIVRTI 120 Query: 331 DDADLEKLLAAGATEVVPEALEGSLMLASHALVMLGVPLRRVVHRVQDARDERYASLRGY 390 DDADL++L AGA EVVPE +EGSLMLASHALV+LGVPLRRVV R Q+ RD RY LRGY Sbjct: 121 DDADLDRLQQAGAAEVVPEIIEGSLMLASHALVLLGVPLRRVVRRAQEMRDARYGLLRGY 180 Query: 391 FHGMSDGEADGVGMNVRLQAVTLIGGASALGHTLAEIDLRAHCGAEVASLRRNKQRIEPP 450 FHG D E VRL +V LI G+ A+G L + L + A R+ + ++P Sbjct: 181 FHGQDDDEDMLERDAVRLHSVPLIKGSPAIGRPLGTLGLETFKTSVTAIRRQGIRALDPE 240 Query: 451 EQTVLMAGDIVVLRGSSESLLRAEKRLLSK 480 T+L GDIVVLRG+ + L +AE+RL + Sbjct: 241 PNTLLELGDIVVLRGTPDGLQQAEERLSPR 270 >RSc0414_1 [P] COG0475 Kef-type K+ transport systems, membrane components Rso Ralstonia solanacearum Length = 389 Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/209 (65%), Positives = 165/209 (78%) Query: 1 MVTLGWAAGKALVVLALLLFFGSKLMRGWFRIVVKRRSQELFMLNLLLITLGAAWITEKA 60 ++TL AA K +V L L+LF G KL+ WF +V RRSQELFMLNLLL+TLG A +TE+ Sbjct: 180 VLTLSIAAVKIIVALVLILFLGQKLLSRWFHLVAARRSQELFMLNLLLVTLGMAALTERL 239 Query: 61 GLSLALGAFIAGMLISETEFKHQVEEDIKSFRDVLLGLFFITIGMLLNVRTVIDHWFLVL 120 GLS+ALGAF+AGML+SET ++ QVEEDIK FRDVLLGLFF+T+GMLL+ R VI HW LV+ Sbjct: 240 GLSMALGAFLAGMLVSETPYRLQVEEDIKPFRDVLLGLFFVTVGMLLDPRVVIGHWGLVI 299 Query: 121 LLLTGPVLLKFGLIAALARLFGSTPGVALRVGLGLAQAGEFGFVLLSQAGGLKLVDPMLI 180 L+ GPVL KF LIA LAR FGS G A+R LGLAQAGEFGFVLL+Q G++L+DP+L Sbjct: 300 GLVIGPVLFKFALIALLARAFGSGGGTAIRTALGLAQAGEFGFVLLNQIDGMRLIDPLLS 359 Query: 181 QVILAAMVLSMLATPFILAKSDAIVMKFS 209 Q ILAAM+LSML PF++ SDAI M+ S Sbjct: 360 QAILAAMLLSMLLAPFLIQYSDAIAMRLS 388 >NMB0209_1 [P] COG0475 Kef-type K+ transport systems, membrane components Nme Neisseria meningitidis MC58 Length = 403 Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 112/217 (51%), Positives = 155/217 (71%) Query: 4 LGWAAGKALVVLALLLFFGSKLMRGWFRIVVKRRSQELFMLNLLLITLGAAWITEKAGLS 63 LG A K L+ L LL F GSK+M WFR+V KR+S ELFM+N+LL+TLG A++TE GLS Sbjct: 181 LGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSELFMINVLLVTLGVAYLTELEGLS 240 Query: 64 LALGAFIAGMLISETEFKHQVEEDIKSFRDVLLGLFFITIGMLLNVRTVIDHWFLVLLLL 123 +ALGAF+AGML+SETE++ QVE+DI+ FRD+LLG FFIT+GM L+++ +I W VL+LL Sbjct: 241 MALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFFFITVGMKLDIQALIGGWRQVLMLL 300 Query: 124 TGPVLLKFGLIAALARLFGSTPGVALRVGLGLAQAGEFGFVLLSQAGGLKLVDPMLIQVI 183 ++LK ++ A+A + G +L+ L LAQ GEFGFV+L+ AG L +V P Q Sbjct: 301 AMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQGGEFGFVMLAIAGQLDMVSPEWEQAA 360 Query: 184 LAAMVLSMLATPFILAKSDAIVMKFSANEWMLQSLAL 220 AA++LSM+ PF+L SDA+V + + W ++SL L Sbjct: 361 TAAVLLSMIIAPFLLGGSDALVGRLVKSSWDMKSLDL 397 >NMA0060_1 [P] COG0475 Kef-type K+ transport systems, membrane components NmA Neisseria meningitidis Z2491 Length = 403 Score = 189 bits (481), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 111/217 (51%), Positives = 154/217 (70%) Query: 4 LGWAAGKALVVLALLLFFGSKLMRGWFRIVVKRRSQELFMLNLLLITLGAAWITEKAGLS 63 LG A K L+ L LL F GSK+M WFR+V KR+S ELFM+N+LL+TLG A++TE GLS Sbjct: 181 LGLAFAKMLLTLGLLFFVGSKIMSRWFRMVAKRKSSELFMINVLLVTLGVAYLTELEGLS 240 Query: 64 LALGAFIAGMLISETEFKHQVEEDIKSFRDVLLGLFFITIGMLLNVRTVIDHWFLVLLLL 123 +ALGAF+AGML+SETE++ QVE+DI+ FRD+LLG FFIT+GM L+++ +I W VL+LL Sbjct: 241 MALGAFVAGMLLSETEYRFQVEDDIRPFRDILLGFFFITVGMKLDIQALIGGWRQVLMLL 300 Query: 124 TGPVLLKFGLIAALARLFGSTPGVALRVGLGLAQAGEFGFVLLSQAGGLKLVDPMLIQVI 183 ++LK ++ A+A + G +L+ L LAQ GEFGFV+L+ AG L +V Q Sbjct: 301 AMLLVLKALVVFAIAFKMKHSVGDSLKTALYLAQGGEFGFVMLAIAGQLDMVSLEWEQAA 360 Query: 184 LAAMVLSMLATPFILAKSDAIVMKFSANEWMLQSLAL 220 AA++LSM+ PF+L SDA+V + + W ++SL L Sbjct: 361 TAAVLLSMIIAPFLLGGSDALVGRLVKSSWDMKSLDL 397 >NMB0209_2 [P] COG1226 Kef-type K+ transport systems, predicted NAD-binding component Nme Neisseria meningitidis MC58 Length = 255 Score = 145 bits (365), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/253 (39%), Positives = 141/253 (55%), Gaps = 8/253 (3%) Query: 227 TMGVQKHVIIAGFGRSGQSLARLLEEEGIAYHALEMDPELVQDARNGGANVSYGDAARRE 286 TM HV+I GFGR GQ++ R+L +E I Y AL++D VQ AR+ G VS+GDA RRE Sbjct: 1 TMSKSDHVLIVGFGRGGQTVGRVLAQEDIPYFALDLDIARVQVARSAGEPVSFGDAKRRE 60 Query: 287 SLVAAGIHRAAALVVTYASTPSALKVLHHAAELEPELPVIVRSHDDADLEKLLAAGATEV 346 L AAG+ RA +VVT + VL + + P +PV VR+ +D ++ GA E Sbjct: 61 VLEAAGLGRAKMVVVTLNNMHETQHVLDNVLSMYPNMPVYVRATNDDYVKTFTDIGAEEA 120 Query: 347 VPEALEGSLMLASHALVMLGVPLRRVVHRVQDARDERYASLRGYFHGMSDGEADGVGMN- 405 V + E L+LA +A++ G R V + + R RYA+L G F G SD EA G G N Sbjct: 121 VSDTKETGLVLAGYAMLGNGASYRHVYQTMANIRHSRYAALEGLFVG-SDDEA-GFGENG 178 Query: 406 --VRLQAVTLIGGASALGHTLAEIDLRAHCGAEVASLRRNKQRIEPPEQT-VLMAGDIVV 462 VR A L A A+G T+ + + A+ G ++ +RR RIE P+ + L GD++V Sbjct: 179 ETVR-HAFPLAAEAYAVGKTVGTLPMAAY-GIKLLFVRRRTGRIENPDASFTLEGGDVLV 236 Query: 463 LRGSSESLLRAEK 475 + G E ++ E Sbjct: 237 VAGKKEEIISFEN 249