BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0039.0005.p (952 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia so... 1584 0.0 NMA1159 [L] COG0178 Excinuclease ATPase subunit NmA Neisseria me... 1409 0.0 NMB0962 [L] COG0178 Excinuclease ATPase subunit Nme Neisseria me... 1405 0.0 PA4234 [L] COG0178 Excinuclease ATPase subunit Pae Pseudomonas a... 1356 0.0 YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis 1335 0.0 >RSc0420 [L] COG0178 Excinuclease ATPase subunit Rso Ralstonia solanacearum Length = 954 Score = 1584 bits (4101), Expect = 0.0, Method: Compositional matrix adjust. Identities = 770/955 (80%), Positives = 851/955 (89%), Gaps = 6/955 (0%) Query: 1 MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 ME I+IRGARTHNLKNINLDLPRN+L+VITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY Sbjct: 1 MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 Query: 61 ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120 ARQFLQLMEKPDVD+IEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYAR GTPYC Sbjct: 61 ARQFLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYC 120 Query: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180 P+H + PLEAQSVSQMVDAVLALP DTKLMI+APVV NRKGEH DLFE MQAQGFVRFRI Sbjct: 121 PEHGQ-PLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKGEHVDLFEAMQAQGFVRFRI 179 Query: 181 QSGTGTA-----KVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLAD 235 +SG GTA KVYEVD LPKLKK +KH I+VV+DRVKV ++KQRLAESFETALRLAD Sbjct: 180 RSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLAD 239 Query: 236 GRAIALEMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDP 295 GRA+ALEMD+GKEH++S+KFACPIC YSL ELEPRLFSFNNPMGACP CDGLG I FFDP Sbjct: 240 GRALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDP 299 Query: 296 KRIVAFPNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGS 355 KR+VAFPNLSLASGAIKGWDRRNQFYFQML S+AA+Y FD D PFE+L + Q VL GS Sbjct: 300 KRVVAFPNLSLASGAIKGWDRRNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGS 359 Query: 356 GRQTIPFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHG 415 G+Q IPF Y+NERGRT V+EH FEG++ NL+RRY+ETDS+AV+EELAK+ N + CP C G Sbjct: 360 GKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIAVREELAKYQNNQACPECEG 419 Query: 416 ARLRVEARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRL 475 RLR EAR+VK+G Q RAIYE+ PLR+ L++F TL L GAK+EIAD+I++EI SRL Sbjct: 420 TRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRL 479 Query: 476 TFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL 535 FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL Sbjct: 480 NFLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL 539 Query: 536 IDTLKHLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSL 595 I TLKHLRD+GN+VLVVEHDED IR +D+VVD+G GAGVHGG +IA G I ++ SL Sbjct: 540 IGTLKHLRDLGNSVLVVEHDEDMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSL 599 Query: 596 TAKYLNGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKS 655 T +YL+G I VPK+RT DE+R L I A+GNNLK+V+ ++PVGLLTCVTGVSGSGKS Sbjct: 600 TGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNADIPVGLLTCVTGVSGSGKS 659 Query: 656 TLVNDTLYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLF 715 TL+NDTLY + ARHLYGS EP AH+ I GLEHFDKVI VDQ+PIGRTPRSNPATYTGLF Sbjct: 660 TLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLF 719 Query: 716 TPIRDLFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHG 775 TPIR+L+A VP AKERGY GRFSFNVKGGRCEACQGDGV+KVEMHFLPDVYVPCDVCHG Sbjct: 720 TPIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHG 779 Query: 776 KRYNRETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSAT 835 KRYNRETLEV YKGKNITE+L+MTVE AHEFF PVP++ RKLQTLLDVGLGYI+LGQSAT Sbjct: 780 KRYNRETLEVLYKGKNITEVLEMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSAT 839 Query: 836 TLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTII 895 TLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDI+LLLKVIH+LRDQGNTV II Sbjct: 840 TLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIELLLKVIHKLRDQGNTVVII 899 Query: 896 EHNLDVIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLKKK 950 EHNLDVIKTADW++DLGPEGGAGGG+I+A GTPEEVAK+ AS TGKYLAPLLK+K Sbjct: 900 EHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK 954 >NMA1159 [L] COG0178 Excinuclease ATPase subunit NmA Neisseria meningitidis Z2491 Length = 948 Score = 1409 bits (3646), Expect = 0.0, Method: Compositional matrix adjust. Identities = 685/946 (72%), Positives = 808/946 (85%), Gaps = 10/946 (1%) Query: 2 EEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61 + IRIRGARTHNLKN++LD+PR+KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA Sbjct: 13 DTIRIRGARTHNLKNVDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 72 Query: 62 RQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP 121 RQFLQ+M+KPDVD+IEGLSPAISIEQK+TSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP Sbjct: 73 RQFLQMMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP 132 Query: 122 DHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRIQ 181 +H + PL +Q+VSQMVDAVL LPEDT++MI+AP V RKGE D F ++QAQGF R R+ Sbjct: 133 EH-KLPLSSQTVSQMVDAVLKLPEDTRVMILAPAVRERKGEFVDFFADLQAQGFARVRVD 191 Query: 182 SGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIAL 241 +VY++D++PKL+K KH IDVVIDRVKVKADIKQRLAESFETALR + RA+A+ Sbjct: 192 -----GEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGNERALAM 246 Query: 242 EMDSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVAF 301 EMDSG+EH +S +FACP+C YSL ELEPRLFSFNNPMG+CP CDGLG+ FFDP+++VA Sbjct: 247 EMDSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAH 306 Query: 302 PNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTIP 361 P LSLASGAI GWD+RNQFYFQM+ S+A +YGFD+ +E L K ++ VL+GSG++ I Sbjct: 307 PELSLASGAIDGWDKRNQFYFQMIQSLARHYGFDVQAAWETLPAKIKKVVLHGSGKEVID 366 Query: 362 FAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRVE 421 F Y++ERG T + H FEG++ NL+RRYRETDS V+E+L ++ N + CPSC GARLR E Sbjct: 367 FTYLSERGTTFNRSHAFEGIIPNLERRYRETDSETVREKLREYQNHRACPSCGGARLRKE 426 Query: 422 ARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNNV 481 ARYV V SG+ ++EV+A PL +T FFETL L G KK+IA++I+KEI RL FL NV Sbjct: 427 ARYVYV-SGE---PLHEVSAWPLTKTHRFFETLDLDGNKKQIAEKILKEITERLGFLINV 482 Query: 482 GLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDTLKH 541 GLDYL+L RSA+TLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL+ TLK Sbjct: 483 GLDYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKR 542 Query: 542 LRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYLN 601 LRD+GN+V+VVEHDEDAIR AD+VVDMG GAG HGG+V+ ++ K + S+T +YL+ Sbjct: 543 LRDLGNSVIVVEHDEDAIREADFVVDMGPGAGEHGGNVLIADTPENVAKCENSVTGQYLS 602 Query: 602 GSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVNDT 661 G IAVP +RTP + RML + GA GNNLKNV LELP+GL+TC+TGVSGSGKSTL+NDT Sbjct: 603 GKKSIAVPSERTPVNPGRMLVLKGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDT 662 Query: 662 LYLSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRDL 721 L AR L +Q EPA ++ I GLEH DKVI VDQ+PIGRTPRSNPATYTGLFTPIR+L Sbjct: 663 LAKITARELNRAQEEPAPYDDIRGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIREL 722 Query: 722 FATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNRE 781 FA+VP+++ERGY+ GRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPC+VCHGKRYNRE Sbjct: 723 FASVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRE 782 Query: 782 TLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGGE 841 TLE+QYKGKNI+++LDMTVE+A EFF VP ++RKLQTL+DVGLGYI+LGQSATTLSGGE Sbjct: 783 TLEIQYKGKNISQVLDMTVEEACEFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGE 842 Query: 842 AQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLDV 901 AQRVKL+LELSKRDTGRTLYILDEPTTGLHF DI LLL+VI RL+ +GN++ IIEHNLDV Sbjct: 843 AQRVKLALELSKRDTGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDV 902 Query: 902 IKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLL 947 IKTADWI+DLGPEGG GGGRI+A+G+PEEVAK S TGKYL +L Sbjct: 903 IKTADWIVDLGPEGGDGGGRIIASGSPEEVAKVKGSYTGKYLKNIL 948 >NMB0962 [L] COG0178 Excinuclease ATPase subunit Nme Neisseria meningitidis MC58 Length = 949 Score = 1405 bits (3636), Expect = 0.0, Method: Compositional matrix adjust. Identities = 683/945 (72%), Positives = 806/945 (85%), Gaps = 10/945 (1%) Query: 4 IRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63 IRIRGARTHNLKNI+LD+PR+KL+V+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ Sbjct: 15 IRIRGARTHNLKNIDLDIPRHKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 74 Query: 64 FLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPDH 123 FLQ+M+KPDVD+IEGLSPAISIEQK+TSHNPRSTVGTVTEIHDYLRLLYARVGTPYCP+H Sbjct: 75 FLQMMDKPDVDLIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLYARVGTPYCPEH 134 Query: 124 PEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRIQSG 183 + PL +Q+VSQMVDAVL LPEDT++MI+AP V RKGE D F ++QAQGF R R+ Sbjct: 135 -KLPLSSQTVSQMVDAVLKLPEDTRVMILAPTVRERKGEFVDFFADLQAQGFARVRVD-- 191 Query: 184 TGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIALEM 243 +VY++D++PKL+K KH IDVVIDRVKVKADIKQRLAESFETALR + RA+A+EM Sbjct: 192 ---GEVYQLDEVPKLEKNIKHNIDVVIDRVKVKADIKQRLAESFETALRHGNERALAMEM 248 Query: 244 DSGKEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRIVAFPN 303 DSG+EH +S +FACP+C YSL ELEPRLFSFNNPMG+CP CDGLG+ FFDP+++VA P Sbjct: 249 DSGEEHWFSARFACPVCSYSLPELEPRLFSFNNPMGSCPTCDGLGNTNFFDPEKVVAHPE 308 Query: 304 LSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQTIPFA 363 LSLA+GAI GWD+RNQFYFQM+ S+A +YGFD+ +E L +K ++ VL+GSG++ I F Sbjct: 309 LSLATGAIDGWDKRNQFYFQMIQSLARHYGFDVQAAWETLPEKVKKVVLHGSGKEVIDFT 368 Query: 364 YVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARLRVEAR 423 Y++ERG T + H FEG++ NL+RRYRETDS V+E+L ++ N + CPSC GARLR EAR Sbjct: 369 YLSERGTTFNRSHAFEGIIPNLERRYRETDSETVREKLREYQNHRACPSCGGARLRKEAR 428 Query: 424 YVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFLNNVGL 483 YV V SG+ ++EV+A PL +T FFETL L G KK+IA++I+KEI RL FL NVGL Sbjct: 429 YVYV-SGE---PLHEVSAWPLTKTHQFFETLDLDGNKKQIAEKILKEITERLGFLINVGL 484 Query: 484 DYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDTLKHLR 543 DYL+L RSA+TLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRL+ TLK LR Sbjct: 485 DYLNLSRSAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLATLKRLR 544 Query: 544 DIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAKYLNGS 603 D+GN+V+VVEHDEDAIR AD+VVDMG GAG HGG+V+ ++ + + S+T +YL+G Sbjct: 545 DLGNSVIVVEHDEDAIREADFVVDMGPGAGEHGGNVLIADTPENVAQCENSVTGQYLSGK 604 Query: 604 LEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLVNDTLY 663 IAVP +RTP + RML + GA GNNLKNV LELP+GL+TC+TGVSGSGKSTL+NDTL Sbjct: 605 KSIAVPSERTPVNPDRMLVLKGARGNNLKNVTLELPLGLITCITGVSGSGKSTLINDTLA 664 Query: 664 LSAARHLYGSQTEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTPIRDLFA 723 AR L +Q EPA + I GLEH DKVI VDQ+PIGRTPRSNPATYTGLFTPIR+LFA Sbjct: 665 KITARELNRAQEEPAPFDDIHGLEHLDKVINVDQSPIGRTPRSNPATYTGLFTPIRELFA 724 Query: 724 TVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKRYNRETL 783 VP+++ERGY+ GRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPC+VCHGKRYNRETL Sbjct: 725 GVPLSRERGYNVGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCEVCHGKRYNRETL 784 Query: 784 EVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTLSGGEAQ 843 E+QYKGKNI+++LDMTVE+A EFF VP ++RKLQTL+DVGLGYI+LGQSATTLSGGEAQ Sbjct: 785 EIQYKGKNISQVLDMTVEEAREFFDAVPTVSRKLQTLMDVGLGYIRLGQSATTLSGGEAQ 844 Query: 844 RVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEHNLDVIK 903 RVKL+LELSKRDTGRTLYILDEPTTGLHF DI LLL+VI RL+ +GN++ IIEHNLDVIK Sbjct: 845 RVKLALELSKRDTGRTLYILDEPTTGLHFADIALLLEVIGRLKGKGNSIVIIEHNLDVIK 904 Query: 904 TADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLK 948 TADWI+DLGPEGG GGGRI+A G+PE+VAK S TGKYL +L+ Sbjct: 905 TADWIVDLGPEGGDGGGRIIAKGSPEQVAKVKGSYTGKYLKVVLR 949 >PA4234 [L] COG0178 Excinuclease ATPase subunit Pae Pseudomonas aeruginosa Length = 945 Score = 1356 bits (3509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 658/953 (69%), Positives = 791/953 (83%), Gaps = 15/953 (1%) Query: 1 MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 M++I IRGARTHNLKN++L LPR+KLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY Sbjct: 1 MDKILIRGARTHNLKNVDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 Query: 61 ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120 ARQFL +MEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEI+DYLRLLYARVGTP C Sbjct: 61 ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC 120 Query: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180 PDH + PLEAQ+VSQMVD VLALPE +KLM++APV+ RKGEH +F+EM+AQGFVR R+ Sbjct: 121 PDH-DIPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKGEHLAVFDEMRAQGFVRARV 179 Query: 181 QSGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIA 240 K+YE+D++PKL K +KH+IDVV+DR KV+AD++QRLAESFETAL LADG A+ Sbjct: 180 D-----GKLYELDEVPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALSLADGIALV 234 Query: 241 LEMDSGK---EHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKR 297 MD + E ++S +FACP+CG+S+ ELEP+LFSFNNP GACP CDGLG +FFD +R Sbjct: 235 APMDEDEDVEEIIFSARFACPVCGHSISELEPKLFSFNNPAGACPTCDGLGVKQFFDARR 294 Query: 298 IVAFPNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGR 357 +V L+LA GAI+GWDRRN +YFQML S+A +YGF L+ PF++L + Q+ VLYGSGR Sbjct: 295 VVN-GELTLAEGAIRGWDRRNVYYFQMLGSLAQHYGFSLEEPFDELGAEHQKVVLYGSGR 353 Query: 358 QTIPFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGAR 417 + + F Y+N+RG V + H FEG++ NL+RRYRET+S V+EELAKF++ + CP CHG R Sbjct: 354 ENVDFRYLNDRGDIVKRSHPFEGILPNLERRYRETESATVREELAKFLSTQPCPDCHGTR 413 Query: 418 LRVEARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTF 477 LR EAR+V VG R + + A P+ E + L LTG + EIA +I+KEI RL F Sbjct: 414 LRREARHVWVGD----RTLPAITAMPVGEACEYAAGLSLTGRRGEIAAKILKEIRDRLQF 469 Query: 478 LNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLID 537 L NVGLDYL+L+RSADTLSGGEAQRIRLASQIG+GL GVMY+LDEPSIGLHQRDN+RL+ Sbjct: 470 LVNVGLDYLTLDRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLG 529 Query: 538 TLKHLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTA 597 TL HLR++GNTV+VVEHDEDAIR ADYVVD+G GAGVHGG V+A G ++ + SLT Sbjct: 530 TLTHLRNLGNTVIVVEHDEDAIRLADYVVDIGPGAGVHGGQVVAEGTPDQVMNHPDSLTG 589 Query: 598 KYLNGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTL 657 KYL+G +IAVP KRTP D+ ++L + GA GNNL+NV+LE+PVGL TC+TGVSGSGKSTL Sbjct: 590 KYLSGRKKIAVPAKRTPRDKKKLLKLKGARGNNLQNVNLEIPVGLFTCITGVSGSGKSTL 649 Query: 658 VNDTLYLSAARHLYGSQT-EPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFT 716 +N+TL+ A L G+ T E A +++ GL+H DKV+ +DQ+PIGRTPRSNPATYTGLFT Sbjct: 650 INNTLFPITATALNGATTLEVAPYDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFT 709 Query: 717 PIRDLFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGK 776 PIR+LF+ VP A+ RGY GRFSFNVKGGRCEACQGDGVIKVEMHFLPD+YVPCDVC GK Sbjct: 710 PIRELFSGVPEARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGK 769 Query: 777 RYNRETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATT 836 RYNRETLE++YKGK+I E+L+MT+E+A EFF VP +ARKLQTL+DVGL YIKLGQSATT Sbjct: 770 RYNRETLEIRYKGKSIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATT 829 Query: 837 LSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIE 896 LSGGEAQRVKLS ELSKRDTG+TLYILDEPTTGLHF DI LL V+HRLRD GNTV +IE Sbjct: 830 LSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIE 889 Query: 897 HNLDVIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLKK 949 HNLDVIKTADW++DLGPEGG+ GG+I+A GTPE+VA+ P S TG +L PLL++ Sbjct: 890 HNLDVIKTADWLVDLGPEGGSKGGQIIANGTPEQVAEMPQSHTGHFLKPLLER 942 >YPO0324 [L] COG0178 Excinuclease ATPase subunit Ype Yersinia pestis Length = 947 Score = 1335 bits (3456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 653/955 (68%), Positives = 785/955 (82%), Gaps = 13/955 (1%) Query: 1 MEEIRIRGARTHNLKNINLDLPRNKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 M+ I +RGARTHNLKNINL +PR+KLIV+TGLSGSGKSSLAFDTLYAEGQRRYVESLSAY Sbjct: 1 MDNIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY 60 Query: 61 ARQFLQLMEKPDVDMIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARVGTPYC 120 ARQFL LMEKPDVD IEGLSPAISIEQK+TSHNPRSTVGT+TEIHDYLRLL+ARVG P C Sbjct: 61 ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC 120 Query: 121 PDHPEHPLEAQSVSQMVDAVLALPEDTKLMIMAPVVANRKGEHADLFEEMQAQGFVRFRI 180 PDH + PL AQ+VSQMVD V++ PE +LM++APVV +RKGEH + E + AQG++R RI Sbjct: 121 PDH-DVPLAAQTVSQMVDNVISQPEGRRLMLLAPVVKDRKGEHTKILENLAAQGYIRARI 179 Query: 181 QSGTGTAKVYEVDDLPKLKKTEKHTIDVVIDRVKVKADIKQRLAESFETALRLADGRAIA 240 +V ++ D PKL+ +KHTI+VV+DR KV+ D+ QRLAESFETAL L+ G A+ Sbjct: 180 D-----GEVCDLSDPPKLELQKKHTIEVVVDRFKVREDLAQRLAESFETALALSGGTAVV 234 Query: 241 LEMDSG--KEHLYSNKFACPICGYSLQELEPRLFSFNNPMGACPECDGLGHIEFFDPKRI 298 +MD +E L+S FACPICGYS++ELEPRLFSFNNP GACP CDGLG +FFDP R+ Sbjct: 235 ADMDDPHVEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQFFDPDRV 294 Query: 299 VAFPNLSLASGAIKGWDRRNQFYFQMLTSIAAYYGFDLDVPFEQLDDKAQQAVLYGSGRQ 358 + P LSLA GAI+GWDRRN +YFQML S+A +Y FD++ PF LD QQAVLYGSG+ Sbjct: 295 LQNPELSLAGGAIRGWDRRNFYYFQMLRSLAEHYKFDIEAPFNSLDSAVQQAVLYGSGKD 354 Query: 359 TIPFAYVNERGRTVVKEHTFEGVVNNLQRRYRETDSMAVKEELAKFINEKQCPSCHGARL 418 TI F Y+N+RG T V+ H FEGV++N++RRY+ET+S AV+EELAKFI+ + C SC G RL Sbjct: 355 TIEFKYINDRGDTTVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRSCASCSGTRL 414 Query: 419 RVEARYVKVGSGKQQRAIYEVAATPLRETLSFFETLKLTGAKKEIADRIIKEIVSRLTFL 478 R EARYV V + + E++ + LSFF+ +KL+G + +IA++I+KEI RL FL Sbjct: 415 RREARYVFV----ENTTLPEISELSIGHALSFFQNMKLSGQRAQIAEKILKEIGDRLKFL 470 Query: 479 NNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIDT 538 NVGL+YLSL RSA+TLSGGEAQRIRLASQIG+GL GVMYVLDEPSIGLHQRDN+RL++T Sbjct: 471 VNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLET 530 Query: 539 LKHLRDIGNTVLVVEHDEDAIRTADYVVDMGIGAGVHGGDVIAHGPLPDILKNKKSLTAK 598 L HLR++GNTV+VVEHDEDAIR AD+V+D+G GAGVHGG+V+A G + DI+ SLT + Sbjct: 531 LIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGTVDDIMAAPASLTGQ 590 Query: 599 YLNGSLEIAVPKKRTPCDESRMLTISGATGNNLKNVDLELPVGLLTCVTGVSGSGKSTLV 658 +L+G IA+P+KR D S++L + GATGNNLK+V L LPVGL +C+TGVSGSGKSTL+ Sbjct: 591 FLSGKRSIAIPEKRVSADPSKVLKLIGATGNNLKDVTLTLPVGLFSCITGVSGSGKSTLI 650 Query: 659 NDTLYLSAARHLYGSQ-TEPAAHEAIGGLEHFDKVIAVDQAPIGRTPRSNPATYTGLFTP 717 NDTLY A R L G+ TEPA + I GLEHFDKVI +DQ+PIGRTPRSNPATYTG+FTP Sbjct: 651 NDTLYSIAQRQLNGATITEPAPYREIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTP 710 Query: 718 IRDLFATVPMAKERGYSAGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCHGKR 777 IR+LFA VP ++ RGY+ GRFSFNVKGGRCEACQGDGVIKVEMHFLPD+YVPCD C GKR Sbjct: 711 IRELFAGVPESRTRGYTPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDHCKGKR 770 Query: 778 YNRETLEVQYKGKNITEILDMTVEDAHEFFKPVPLIARKLQTLLDVGLGYIKLGQSATTL 837 YNRETLEV+YKGK+I E+L MT+E+A EFF VP +ARKLQTL+DVGL YI LGQSATTL Sbjct: 771 YNRETLEVKYKGKSIHEVLAMTIEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTL 830 Query: 838 SGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIDLLLKVIHRLRDQGNTVTIIEH 897 SGGEAQRVKLS ELSKR TG+TLYILDEPTTGLHF DI LL V+H+LRDQGNT+ +IEH Sbjct: 831 SGGEAQRVKLSRELSKRGTGQTLYILDEPTTGLHFADIQQLLAVLHQLRDQGNTIVVIEH 890 Query: 898 NLDVIKTADWIIDLGPEGGAGGGRIVAAGTPEEVAKNPASVTGKYLAPLLKKKSK 952 NLDVIKTADWI+DLGPEGG+GGG I+ +GTPE VA+ AS T ++L P+L++K + Sbjct: 891 NLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECAASHTARFLKPMLQRKPQ 945