BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0039.0002.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Paste...   187   8e-48
HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemo...   184   7e-47
VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibri...   178   3e-45
NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neis...   176   1e-44
NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neis...   176   1e-44

>PM1950 [L] COG0629 Single-stranded DNA-binding protein Pmu Pasteurella
           multocida
          Length = 166

 Score =  187 bits (475), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 98/166 (59%), Positives = 116/166 (69%), Gaps = 10/166 (6%)

Query: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60
           MA VNKVIIVGNLG DPE R MPNGEAV NI+VAT+ESW DKNT E++E+TEWHRI FYR
Sbjct: 1   MAGVNKVIIVGNLGNDPEIRTMPNGEAVANISVATSESWIDKNTNERREVTEWHRIVFYR 60

Query: 61  KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSR----QGGGG 116
           + AE+AG+YL+KGS++YVEGRL+TRKWQD+ G +RYTTEI  D +QML SR    Q GG 
Sbjct: 61  RQAEVAGEYLRKGSKVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRNERQQTGGY 120

Query: 117 GGMDEGGYGGGGGGGSSAPRQQPAQRPAP-NFSDMD-----DDIPF 156
                        G   A   +PA +PAP N   MD     D+IPF
Sbjct: 121 APQTAAPQYNAPTGSYGAQPSRPATKPAPQNEPPMDMGFEEDNIPF 166


>HI0250 [L] COG0629 Single-stranded DNA-binding protein Hin Haemophilus
           influenzae
          Length = 168

 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/168 (58%), Positives = 116/168 (69%), Gaps = 12/168 (7%)

Query: 1   MASVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYR 60
           MA +NKVIIVG+LG DPE R MPNG+AV NI+VAT+ESW D+NTGE++E+TEWHRI FYR
Sbjct: 1   MAGINKVIIVGHLGNDPEIRTMPNGDAVANISVATSESWNDRNTGERREVTEWHRIVFYR 60

Query: 61  KLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSR-QGGGGGGM 119
           + AEI G+YL+KGSQ+YVEGRL+TRKWQD+ G +RYTTEI  D MQMLG R Q  GG G 
Sbjct: 61  RQAEICGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVMQMLGGRNQNAGGYGN 120

Query: 120 DEGGY-----------GGGGGGGSSAPRQQPAQRPAPNFSDMDDDIPF 156
           D GG             G     S    QQ A +  P     DDDIPF
Sbjct: 121 DMGGAPQSSYQARQTNNGNSYQSSRPAPQQAAPQAEPPMDGFDDDIPF 168


>VC0397 [L] COG0629 Single-stranded DNA-binding protein Vch Vibrio cholerae
          Length = 177

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 21/177 (11%)

Query: 1   MAS--VNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITF 58
           MAS  VNKVI++GNLG+DPE RYMP+G AV NI +AT+E+W+DK TGE+KE TEWHR+T 
Sbjct: 1   MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTL 60

Query: 59  YRKLAEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIAD----TMQMLGSRQGG 114
           Y KLAE+AG+YL+KGSQ+Y+EG+LQTRKWQD+ G +RY+TE++       MQMLG R   
Sbjct: 61  YGKLAEVAGEYLRKGSQVYIEGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQ 120

Query: 115 GG----GGMDEGGYGGGGGGGSSAPRQ-QPAQRPAP-NFS---------DMDDDIPF 156
           GG    GGM+     G  G      +Q QP Q+ AP  +S         D DDDIPF
Sbjct: 121 GGMPAQGGMNVPAQQGSWGQPQQPAKQHQPMQQSAPQQYSQPQYNEPPMDFDDDIPF 177


>NMB1460 [L] COG0629 Single-stranded DNA-binding protein Nme Neisseria
           meningitidis MC58
          Length = 174

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 114/175 (65%), Gaps = 23/175 (13%)

Query: 3   SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62
           S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL
Sbjct: 2   SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60

Query: 63  AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMDEG 122
           AEIAGQYLKKG  +Y+EGR+Q+RK+Q K+G+ER   +I+A+ M+MLG R    GG   E 
Sbjct: 61  AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120

Query: 123 GYGGGGGG---------------------GSSAPRQQPAQRPAPNFSDMDDDIPF 156
           GYG                            +APR+QP    AP   D+DDDIPF
Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174


>NMA1672 [L] COG0629 Single-stranded DNA-binding protein NmA Neisseria
           meningitidis Z2491
          Length = 174

 Score =  176 bits (447), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/175 (52%), Positives = 114/175 (65%), Gaps = 23/175 (13%)

Query: 3   SVNKVIIVGNLGRDPETRYMPNGEAVTNIAVATTESWKDKNTGEKKELTEWHRITFYRKL 62
           S+NKVI++G LGRDPE RYMPNGEAV N +VAT+E+W D+N G++ E TEWH IT YRKL
Sbjct: 2   SLNKVILIGRLGRDPEVRYMPNGEAVCNFSVATSETWNDRN-GQRVERTEWHNITMYRKL 60

Query: 63  AEIAGQYLKKGSQIYVEGRLQTRKWQDKEGVERYTTEIIADTMQMLGSRQGGGGGGMDEG 122
           AEIAGQYLKKG  +Y+EGR+Q+RK+Q K+G+ER   +I+A+ M+MLG R    GG   E 
Sbjct: 61  AEIAGQYLKKGGLVYLEGRIQSRKYQGKDGIERTAYDIVANEMKMLGGRNENSGGAPYEE 120

Query: 123 GYGGGGGG---------------------GSSAPRQQPAQRPAPNFSDMDDDIPF 156
           GYG                            +APR+QP    AP   D+DDDIPF
Sbjct: 121 GYGQSQEAYQRPAQQSRQPASDAPSHPQEAPAAPRRQPVPAAAP-VEDIDDDIPF 174