BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0232.p (400 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidi... 239 6e-63 PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aer... 231 2e-60 BH2116 [G] COG2814 Arabinose efflux permease Bha Bacillus halodu... 130 5e-30 mll3374 Non COG 128 3e-29 mlr4084 Non COG 125 2e-28 >XF1728 [G] COG2814 Arabinose efflux permease Xfa Xylella fastidiosa 9a5c Length = 447 Score = 239 bits (611), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 159/383 (41%), Positives = 225/383 (58%) Query: 16 LPLAALLALTMTSFIATANESVPAGLLSGIAHGLGVSEAGAGQLVTCCAFGSGVAAIPLT 75 LP AALL L MT FIA E++PAGLL IA L + AGQ+VT A GS +AAIPL Sbjct: 65 LPTAALLMLAMTGFIAIVTETLPAGLLPQIAQDLAIPATAAGQMVTVYAAGSLLAAIPLV 124 Query: 76 ALFAEWARRRLLVVALSIFLIGNAMTAATDSYLAALFARLVIGLATGVTWSLLAGYARAL 135 +L R+ +L++AL+ FL N +TA + + L AR + G++ G++W LL GYAR + Sbjct: 125 SLTQTRRRKPVLMLALAGFLFFNLVTAFSPWFALTLVARFLAGVSAGLSWGLLGGYARRM 184 Query: 136 VEPEYQGRAMAVAMAGIPLALALGMPLGSWLGAVSGWRSVFLFLAAMAAALIVWVYAAVP 195 V +GRA+AVAM G PLAL++G+PLG++ G + GWR F+ L+ +AA L+V + +P Sbjct: 185 VVDRLKGRALAVAMVGTPLALSIGVPLGTFTGGIIGWRGAFVSLSVVAALLLVAMAWRMP 244 Query: 196 ELQGSRTLRRRRLPEVLATPGVRPVLVVLALWIFSHYLMYTYVSPMLAWLGFEPYLQQVL 255 ++ G RR + VL + GVR +L W+ + Y++YTY++ LG + +L Sbjct: 245 DVPGQPPERRISIGSVLGSAGVRSILFTALAWVTAQYMLYTYIAVFAGTLGRSADVDLLL 304 Query: 256 LIFGLSAVVGNWLVGMLIDRWLRRLVLACLAAFAATAAGFAWSPSNPVLASVGIVIWGLS 315 L FG++A+VG WL G+++DR LR V+ L F A F S + A +++WG S Sbjct: 305 LAFGVAAIVGIWLAGVMVDRHLRLHVIGSLVLFVAVTLVFTSPASAALFAVPAMMLWGAS 364 Query: 316 FGGAPTLLQTALADQAGADANIAQSVLVTVFNLVFAGSGAFGGALLDMRGAGALPCVAAG 375 FGGA T +QTA +D AG +I ++L TV+N A GA G +L GA LP Sbjct: 365 FGGAATSIQTAASDAAGEGVDIVGAMLTTVWNAGIAAGGALGALVLARGGASVLPASMLP 424 Query: 376 LLATAGIVAWQASHSGFKAGCRA 398 L+ A A GFKAG RA Sbjct: 425 LILVALATALACRRHGFKAGARA 447 >PA2314 [G] COG2814 Arabinose efflux permease Pae Pseudomonas aeruginosa Length = 417 Score = 231 bits (590), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 191/382 (50%), Positives = 249/382 (65%) Query: 16 LPLAALLALTMTSFIATANESVPAGLLSGIAHGLGVSEAGAGQLVTCCAFGSGVAAIPLT 75 LPL+ALLA+ M+ F+A +E++PAGLL I GL VSEA AGQLV+ A GS +AA+P Sbjct: 22 LPLSALLAMAMSGFVAILSETLPAGLLPQIGAGLAVSEALAGQLVSVYALGSLLAALPAA 81 Query: 76 ALFAEWARRRLLVVALSIFLIGNAMTAATDSYLAALFARLVIGLATGVTWSLLAGYARAL 135 +L W RRR+L++AL IF + N+ TA + Y L AR G+A G+ W LLAGYAR L Sbjct: 82 SLTQGWRRRRVLLLALLIFFVCNSFTAVSSDYRLTLLARFGSGVAAGLAWGLLAGYARRL 141 Query: 136 VEPEYQGRAMAVAMAGIPLALALGMPLGSWLGAVSGWRSVFLFLAAMAAALIVWVYAAVP 195 V PE QGRA+AVAM G PLAL+LG+PLG+WLG + GWR F L+ A L+ WV +VP Sbjct: 142 VPPEQQGRALAVAMLGAPLALSLGVPLGTWLGGLLGWRWAFGLLSLTALLLVGWVLRSVP 201 Query: 196 ELQGSRTLRRRRLPEVLATPGVRPVLVVLALWIFSHYLMYTYVSPMLAWLGFEPYLQQVL 255 + G RR RL VL TPGVRPVL+V+ W+ +H ++YTY++P LA +G + L Sbjct: 202 DFPGQPAGRRLRLLGVLRTPGVRPVLLVIVAWVLAHNILYTYIAPFLAKVGLGASVDLAL 261 Query: 256 LIFGLSAVVGNWLVGMLIDRWLRRLVLACLAAFAATAAGFAWSPSNPVLASVGIVIWGLS 315 L+FG +AV G WLVG+L+DR LRR+VLA LA FA A LA G+ +WGL+ Sbjct: 262 LVFGSAAVAGIWLVGVLVDRHLRRMVLASLALFAVAALALCLGARWSWLAFAGLALWGLT 321 Query: 316 FGGAPTLLQTALADQAGADANIAQSVLVTVFNLVFAGSGAFGGALLDMRGAGALPCVAAG 375 FGGA TLLQTA AD AG A++AQS++V +NL AG GA GG +L G+ LP Sbjct: 322 FGGAATLLQTASADAAGEGADLAQSMIVVAWNLAIAGGGALGGMVLQRWGSEMLPWTLLP 381 Query: 376 LLATAGIVAWQASHSGFKAGCR 397 L+ A ++ W + F+ G R Sbjct: 382 LIGLAAVLVWGNAAHAFRVGPR 403 >BH2116 [G] COG2814 Arabinose efflux permease Bha Bacillus halodurans Length = 286 Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/256 (30%), Positives = 144/256 (56%), Gaps = 4/256 (1%) Query: 24 LTMTSFIATANESVPAGLLSGIAHGLGVSEAGAGQLVTCCAFGSGVAAIPLTALFAEWAR 83 L++ +F+ E V +G+L I+ LGVS A AGQL+T + A+ L L A++ R Sbjct: 13 LSLGAFVTGTAEFVFSGILEIISLDLGVSIAAAGQLLTMYSLSYAAGALILVLLTAKYNR 72 Query: 84 RRLLVVALSIFLIGNAMTAATDSYLAALFARLVIGLATGVTWSLLAGYARALVEPEYQGR 143 +++L+ A+ FLIGN + + SY +F+R+V+ ++ G+ + YA +V PE +G Sbjct: 73 KKVLMYAIFTFLIGNLIAFVSYSYSLLMFSRVVMAMSGGLYIVVATNYAAQIVSPEKRGS 132 Query: 144 AMAVAMAGIPLALALGMPLGSWLGAVSGWRSVFLFLAAMAAALIVWVYAAVPELQGSRTL 203 A+A + G ++L LG+P+G++ A WR +FL +A ++ LI+ +Y +PE+Q ++ L Sbjct: 133 AIAKIITGFTVSLVLGVPIGTFFSAYVDWRYIFLIIALISLFLIISLYKLLPEIQANKPL 192 Query: 204 RRRRLPEVLATPGVRPVLVVLALWIFSHYLMYTYVSPMLAWLGFEPYLQQV---LLIFGL 260 +++ + L WI + +++ Y+SP+L+ P L+ + L + G Sbjct: 193 PFTTQLQIMKDRRLMTGLGTTIFWILGYTMVFAYISPLLSREAEMP-LEMISVALFVLGT 251 Query: 261 SAVVGNWLVGMLIDRW 276 SA +G+ G +D+W Sbjct: 252 SAFIGSRFGGFAVDKW 267 >mll3374 Non COG Length = 404 Score = 128 bits (321), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/369 (31%), Positives = 176/369 (47%), Gaps = 10/369 (2%) Query: 1 MNPSNLTRSCEGGRGLPLAALLALTMTSFIATANESVPAGLLSGIAHGLGVSEAGAGQLV 60 +NP++ E G A+++L + F E +PA LL+ +A LGV+E AGQ V Sbjct: 14 LNPADTDERTEPAWG----AVVSLALGVFGLVTAEFLPASLLTPMARDLGVTEGVAGQAV 69 Query: 61 TCCAFGSGVAAIPLTALFAEWARRRLLVVALSIFLI-GNAMTAATDSYLAALFARLVIGL 119 T A +AA P A+ RRL++ L+ FLI N + S L AR+V+G+ Sbjct: 70 TATAIVGAIAA-PTMAIITRRMDRRLVMWMLTSFLILSNLLATFAASLPMLLLARVVLGV 128 Query: 120 ATGVTWSLLAGYARALVEPEYQGRAMAVAMAGIPLALALGMPLGSWLGAVSGWRSVFLFL 179 A G W++ A A LV RAM++ + G+ LA PLG+++G + GWR+ F+ Sbjct: 129 ALGGFWAMSAAMALRLVPMRLMPRAMSIILTGVSLATVTAAPLGAYVGDIWGWRTAFMIA 188 Query: 180 AAMAAALIVWVYAAVPELQGSRTLRRRRLPEVLATPGVRPVLVVLALWIFSHYLMYTYVS 239 + A ++ A +P+L L +VL P +R L+V+ L H+ +TYV Sbjct: 189 TIVGALALLVQLATIPKLPPMGVASFLTLLDVLKRPSIRVALLVVLLVASGHFAGFTYVR 248 Query: 240 PMLAW---LGFEPYLQQVLLIFGLSAVVGNWLVGMLIDRWLRRLVLACLAAFAATAAGFA 296 P L L E + VLL +G+ GN G L +R L+ V A AA Sbjct: 249 PFLEKVPVLHIE-TISLVLLAYGIGGFFGNIAGGFLAERNLKIAVALAPLLIALAAASML 307 Query: 297 WSPSNPVLASVGIVIWGLSFGGAPTLLQTALADQAGADANIAQSVLVTVFNLVFAGSGAF 356 +P +A+ + WG +FG P LQ+ L A A A ++V F + A F Sbjct: 308 IFGPSPTIAAAAVTAWGFAFGAVPVGLQSWLVRAAPDQAESAGGLMVATFQVAIALGAVF 367 Query: 357 GGALLDMRG 365 GG L+D G Sbjct: 368 GGLLVDHAG 376 >mlr4084 Non COG Length = 397 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/348 (32%), Positives = 174/348 (50%), Gaps = 8/348 (2%) Query: 20 ALLALTMTSFIATANESVPAGLLSGIAHGLGVSEAGAGQLVTCCAFGSGVAAIPLTALFA 79 AL AL +F E V GLL ++ LGVS + AGQL++ A G + A LT Sbjct: 4 ALYALAAGAFGIGVTEFVIMGLLIDVSKDLGVSISAAGQLISGYALGVVIGAPLLTIATG 63 Query: 80 EWARRRLLVVALSIFLIGNAMTAATDSYLAALFARLVIGLATGVTWSLLAGYARALVEPE 139 W R+ +L+ ++IF +GN A Y A + AR++ A G + + + A LV P Sbjct: 64 NWPRKTVLLALMAIFTLGNLACALAPDYWALMGARIITAFAHGTFFGVGSVVATGLVAPN 123 Query: 140 YQGRAMAVAMAGIPLALALGMPLGSWLGAVSGWRSVFLFLAAMAAALIVWVYAAVPELQG 199 + A+A+ G+ +A LG+P G+WLG GWR+ F + A+ A + A VP Q Sbjct: 124 KKASAIALMFTGLTIANILGVPFGTWLGQAFGWRATFWAVTAVGLAAFAVILALVPRSQV 183 Query: 200 SRTLRRRRLPEVLATPGVRPVLVVLALWIFSH---YLMYTYVSPMLAWL-GF-EPYLQQV 254 + + L LA PVL+ LA + + + ++TY++P+L + GF E + + Sbjct: 184 AP--EKSDLRADLAVLRRTPVLLGLATTVLGYAGVFAVFTYIAPLLTEISGFKEAAVSPI 241 Query: 255 LLIFGLSAVVGNWLVGMLIDRWLRRLVLACLAAFAATAAGFAWSPSNPVLASVGIVIWGL 314 LL+FG + GN G + DRWL VL L A A +++ + VLA + + + G Sbjct: 242 LLVFGGGLIAGNLAGGKVADRWLVPAVLGSLVVLALVLATMSFAIHSQVLAVIYVGLLGA 301 Query: 315 SFGGAPTLLQTALADQA-GADANIAQSVLVTVFNLVFAGSGAFGGALL 361 + LQ + D+A GA ++A S + FNL A GGA++ Sbjct: 302 AAFATVAPLQMWVLDKAQGAGQSLASSFNIAAFNLGNAAGAWLGGAVI 349