BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0211.p (346 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1285 [K] COG1386 Predicted transcriptional regulator containi... 266 5e-71 NMA0951 [K] COG1386 Predicted transcriptional regulator containi... 162 9e-40 XF2452_1 [K] COG1386 Predicted transcriptional regulator contain... 162 1e-39 PA3197 [K] COG1386 Predicted transcriptional regulator containin... 156 6e-38 mll1087 [K] COG1386 Predicted transcriptional regulator containi... 107 4e-23 >RSc1285 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Rso Ralstonia solanacearum Length = 304 Score = 266 bits (680), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 122/194 (62%), Positives = 157/194 (80%), Gaps = 9/194 (4%) Query: 1 MNIAEAKKVLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEWADK 60 MN EAK VLETAL+C +PL ++DL+KL+ D++A+ IR +L+ELR +W D+ Sbjct: 1 MNTQEAKIVLETALICAQDPLRVSDLRKLF-------DEDVSADTIRVLLEELRQDWLDR 53 Query: 61 GVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIR 120 GVE+V+L++GWR QSR EM+ YL+RL+PEKPP+Y+RA +ETLAIIAYRQPVTRGDIEDIR Sbjct: 54 GVELVALASGWRLQSRPEMRAYLDRLHPEKPPKYSRAVMETLAIIAYRQPVTRGDIEDIR 113 Query: 121 GVAVNSQTIKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPLQQVSGE 180 GV VN+Q IK +E+RGW+E IGHRDVPGRPAL+ATT++FLDDLGL +L+ELPPL+ Sbjct: 114 GVTVNTQVIKQIEDRGWVEVIGHRDVPGRPALYATTKQFLDDLGLRSLDELPPLE--DAR 171 Query: 181 AAAQGALLELQALE 194 A AQ +LLE A+E Sbjct: 172 AQAQASLLEQGAIE 185 >NMA0951 [K] COG1386 Predicted transcriptional regulator containing the HTH domain NmA Neisseria meningitidis Z2491 Length = 200 Score = 162 bits (410), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 83/170 (48%), Positives = 113/170 (66%), Gaps = 7/170 (4%) Query: 9 VLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEWADKGVEVVSLS 68 ++E ALL EPL+ +++L V P S++ + +L +L+T W D+ +++V Sbjct: 10 LIEAALLTQTEPLTEKSMRELCVPPLSQDK-------LIDVLAQLKTRWQDRALQLVHTQ 62 Query: 69 TGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVAVNSQT 128 GWRFQ + L L ++ PRY+RA +ETLAIIAY+QPVTRGDIE IRGVAV+ Sbjct: 63 EGWRFQIVQTAFERLGSLQEQRAPRYSRAVMETLAIIAYQQPVTRGDIEGIRGVAVSQNV 122 Query: 129 IKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPLQQVS 178 I+ L++RGWIE IGHRD G+PAL+ATT FL DL L LEELPPL ++ Sbjct: 123 IQTLQDRGWIEVIGHRDTLGKPALWATTATFLSDLRLDGLEELPPLTELG 172 >XF2452_1 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Xfa Xylella fastidiosa 9a5c Length = 193 Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/174 (45%), Positives = 121/174 (69%), Gaps = 5/174 (2%) Query: 1 MNIAEAKKVLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEWADK 60 +++ +++E ALL +++PL++ L+ L+ + I + I++ ++ L+ A++ Sbjct: 10 LDLTLIARIVEGALLASNQPLTLAQLQGLFPN-----DPPIPPDSIQRAIELLQHTCAER 64 Query: 61 GVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIR 120 VE+V +++G+RFQ + ++ ++ L E+ +Y+RATLETLA+IAYRQP+TRG+IE IR Sbjct: 65 SVELVEVASGFRFQLKADVHAWVTPLWTERKTKYSRATLETLALIAYRQPITRGEIEQIR 124 Query: 121 GVAVNSQTIKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPL 174 GVAVNS I LEER WI +GHRD PG+PALF TT+ FLD GL L+ELPPL Sbjct: 125 GVAVNSNIIHTLEEREWIRVVGHRDAPGKPALFGTTKAFLDYFGLKRLDELPPL 178 >PA3197 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Pae Pseudomonas aeruginosa Length = 332 Score = 156 bits (395), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 81/177 (45%), Positives = 113/177 (63%), Gaps = 8/177 (4%) Query: 1 MNIA---EAKKVLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEW 57 MN++ E +LE LL +PLS+ L +L+ + E E R L L Sbjct: 1 MNLSDPHELATLLEGILLAAGKPLSLERLAELFDEAERPEPGQF-----RDALAILALSC 55 Query: 58 ADKGVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIE 117 A + E+ +++G+R Q R+ ++ RL E+P RY+RA LETL +IAYRQP+TRG+IE Sbjct: 56 AGRSFELKEVASGYRLQIRERFSPWVGRLWEERPQRYSRALLETLVLIAYRQPITRGEIE 115 Query: 118 DIRGVAVNSQTIKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPL 174 +IRGVAVN+Q +K L ER WI +G+R+VPGRPA+ ATT+ FLD L +L+ELPPL Sbjct: 116 EIRGVAVNTQIVKTLMEREWIRIVGYREVPGRPAMLATTKAFLDYFNLKSLDELPPL 172 >mll1087 [K] COG1386 Predicted transcriptional regulator containing the HTH domain Mlo Mesorhizobium loti Length = 254 Score = 107 bits (267), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 11/187 (5%) Query: 1 MNIAEAKKVLETALLCTHEPLSINDLKKLYVDPESEESSDINAEMIRQMLDELRTEWADK 60 ++IAEA ++ E + + EP+S L D IN + + EL+ ++ + Sbjct: 38 LHIAEAVRMAEAIVFASTEPVSEKQLAARLPD-------GINVAL---AMAELQQVYSRR 87 Query: 61 GVEVVSLSTGWRFQSRKEMKVYLERLNPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIR 120 GV +V + W F++ ++ + R + + + +RA LE LAIIAY QPVTR +IEDIR Sbjct: 88 GVNLVRVGDAWAFRTAGDLAFLMSR-DTVQQRKLSRAALEVLAIIAYHQPVTRAEIEDIR 146 Query: 121 GVAVNSQTIKMLEERGWIESIGHRDVPGRPALFATTRKFLDDLGLSALEELPPLQQVSGE 180 GV + T+ L E W+ G R PGRP + TT FLD L + +LP ++++ G Sbjct: 147 GVETSKGTLDTLLETEWVRMRGRRKTPGRPVTYGTTETFLDHFALEEIRDLPGMEELKGA 206 Query: 181 AAAQGAL 187 G + Sbjct: 207 GLLSGRM 213