BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0208.p         (78 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0810 [O] COG0425 Predicted redox protein, regulator of disulf...   111   5e-25
BS_yrkI [O] COG0425 Predicted redox protein, regulator of disulf...    75   4e-14
PA1006 [O] COG0425 Predicted redox protein, regulator of disulfi...    73   2e-13
NMB0681 [O] COG0425 Predicted redox protein, regulator of disulf...    72   3e-13
NMA0882 [O] COG0425 Predicted redox protein, regulator of disulf...    72   3e-13

>RSc0810 [O] COG0425 Predicted redox protein, regulator of disulfide bond
          formation Rso Ralstonia solanacearum
          Length = 75

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 65/76 (85%), Gaps = 1/76 (1%)

Query: 3  IQFHRELDARGLNCPLPILKTKKALADMASGQVLRVTATDTGSVRDFQAFAKQTGNDLLE 62
          ++F +E+DARGLNCPLPIL+TKKALADM SG+VL+V ATD G+ RDFQAFAKQTGN+LL 
Sbjct: 1  MEFQKEIDARGLNCPLPILRTKKALADMQSGEVLKVLATDPGATRDFQAFAKQTGNELLA 60

Query: 63 QSQNDEHEFIFFMKRK 78
           S+ D+  F F+M+R+
Sbjct: 61 HSEQDK-VFTFYMRRR 75


>BS_yrkI [O] COG0425 Predicted redox protein, regulator of disulfide bond
          formation Bsu Bacillus subtilis
          Length = 75

 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 51/70 (72%), Gaps = 2/70 (2%)

Query: 9  LDARGLNCPLPILKTKKALADMASGQVLRVTATDTGSVRDFQAFAKQTGNDLLEQSQNDE 68
          LDA+GL CP+PI++TKKA+ ++ SGQ+L V ATD G+  D  A++K  G+DLLEQ+  DE
Sbjct: 7  LDAKGLACPMPIVRTKKAMNELESGQILEVHATDKGAKNDLTAWSKSGGHDLLEQT--DE 64

Query: 69 HEFIFFMKRK 78
           + + F  +K
Sbjct: 65 GDILKFWIQK 74


>PA1006 [O] COG0425 Predicted redox protein, regulator of disulfide bond
          formation Pae Pseudomonas aeruginosa
          Length = 83

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 51/71 (71%), Gaps = 1/71 (1%)

Query: 8  ELDARGLNCPLPILKTKKALADMASGQVLRVTATDTGSVRDFQAFAKQTGNDLLEQSQND 67
          ELDA GLNCPLP+LK K  L  + SG VL+V ATD GS RDF+AFA+  G++LL + +  
Sbjct: 14 ELDASGLNCPLPLLKAKLELNRLPSGGVLKVIATDAGSQRDFRAFAQLAGHELLRE-EAA 72

Query: 68 EHEFIFFMKRK 78
          E  + ++++++
Sbjct: 73 EGVYRYWLRKR 83


>NMB0681 [O] COG0425 Predicted redox protein, regulator of disulfide bond
          formation Nme Neisseria meningitidis MC58
          Length = 74

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 42/59 (71%)

Query: 9  LDARGLNCPLPILKTKKALADMASGQVLRVTATDTGSVRDFQAFAKQTGNDLLEQSQND 67
          LD  GL CPLPIL+ KKALA M  G VL V ATD G+  DF+AF +QTG+ LL+ S+ D
Sbjct: 6  LDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPGDFEAFCRQTGHVLLDASEQD 64


>NMA0882 [O] COG0425 Predicted redox protein, regulator of disulfide bond
          formation NmA Neisseria meningitidis Z2491
          Length = 74

 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 42/59 (71%)

Query: 9  LDARGLNCPLPILKTKKALADMASGQVLRVTATDTGSVRDFQAFAKQTGNDLLEQSQND 67
          LD  GL CPLPIL+ KKALA M  G VL V ATD G+  DF+AF +QTG+ LL+ S+ D
Sbjct: 6  LDVTGLKCPLPILRAKKALAQMQQGDVLTVLATDGGAPGDFEAFCRQTGHVLLDASEQD 64