BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0206.p (205 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0797 [J] COG0013 Alanyl-tRNA synthetase Rso Ralstonia solanac... 313 1e-85 alaS [J] COG0013 Alanyl-tRNA synthetase Eco Escherichia coli K12 204 1e-52 ECs3554 [J] COG0013 Alanyl-tRNA synthetase Ecs Escherichia coli ... 203 3e-52 STM2827 [J] COG0013 Alanyl-tRNA synthetase Sty Salmonella typhim... 201 1e-51 VC0545 [J] COG0013 Alanyl-tRNA synthetase Vch Vibrio cholerae 198 7e-51 >RSc0797 [J] COG0013 Alanyl-tRNA synthetase Rso Ralstonia solanacearum Length = 884 Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 161/205 (78%), Positives = 177/205 (86%) Query: 1 VTRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLP 60 V RTGDIGLFKIV E GVAAGIRRVEA+TG+ L +Q+L +R+ EAAAAL+ QP EL Sbjct: 680 VARTGDIGLFKIVGESGVAAGIRRVEAITGDNVLHYLQTLDTRIGEAAAALRAQPSELTQ 739 Query: 61 RIGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETM 120 RI QVQDQVK+LEKEL LKSKLA+SQGDELV+QAVD+ GIKVLAA L+GAD TLRETM Sbjct: 740 RIVQVQDQVKSLEKELERLKSKLAASQGDELVSQAVDVAGIKVLAAKLDGADAKTLRETM 799 Query: 121 DKLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGGKGGGRPDMA 180 DKLKDKLKTAAIVLGSV DGKV+LIAGVTADATA++KAGELVNFVAQQVGGKGGGRPDMA Sbjct: 800 DKLKDKLKTAAIVLGSVSDGKVALIAGVTADATARIKAGELVNFVAQQVGGKGGGRPDMA 859 Query: 181 QAGGTEPAALPGALQGVAGWVQSKL 205 QAGGTEP LP AL GV WVQ K+ Sbjct: 860 QAGGTEPDKLPQALAGVTAWVQQKV 884 >alaS [J] COG0013 Alanyl-tRNA synthetase Eco Escherichia coli K12 Length = 876 Score = 204 bits (518), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/204 (54%), Positives = 148/204 (72%) Query: 2 TRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPR 61 +RTGDIGLF+I+SE G AAG+RR+EAVTGEGA+A V + S R++E A LK L + Sbjct: 672 SRTGDIGLFRIISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADK 731 Query: 62 IGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMD 121 + V ++ + LEKEL LK + A+ + L ++A+D+NG+K+L + L G + LR +D Sbjct: 732 VRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVD 791 Query: 122 KLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGGKGGGRPDMAQ 181 LK++L + IVL +V +GKVSLIAGV+ D T +VKAGEL+ VAQQVGGKGGGRPDMAQ Sbjct: 792 DLKNQLGSTIIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQ 851 Query: 182 AGGTEPAALPGALQGVAGWVQSKL 205 AGGT+ AALP AL V GWV +KL Sbjct: 852 AGGTDAAALPAALASVKGWVSAKL 875 >ECs3554 [J] COG0013 Alanyl-tRNA synthetase Ecs Escherichia coli O157:H7 Length = 876 Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 111/204 (54%), Positives = 147/204 (72%) Query: 2 TRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPR 61 +RTGDIGLF+I+SE G AAG+RR+EAVTGEGA+ V + S R++E A LK L + Sbjct: 672 SRTGDIGLFRIISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADK 731 Query: 62 IGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMD 121 + V ++ + LEKEL LK + A+ + L ++A+D+NG+K+L + L G + LR +D Sbjct: 732 VRSVLERTRQLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVD 791 Query: 122 KLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGGKGGGRPDMAQ 181 LK++L + IVL +V +GKVSLIAGV+ D T +VKAGEL+ VAQQVGGKGGGRPDMAQ Sbjct: 792 DLKNQLGSTIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQ 851 Query: 182 AGGTEPAALPGALQGVAGWVQSKL 205 AGGT+ AALP AL V GWV +KL Sbjct: 852 AGGTDAAALPAALASVKGWVSAKL 875 >STM2827 [J] COG0013 Alanyl-tRNA synthetase Sty Salmonella typhimurium LT2 Length = 876 Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 113/204 (55%), Positives = 148/204 (72%) Query: 2 TRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPR 61 +RTGDIGLF+I+SE G AAGIRR+EAVTGEGA+A V + S R+ + A LK + L + Sbjct: 672 SRTGDIGLFRIISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDK 731 Query: 62 IGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMD 121 + V ++ + LEKEL LK + A+ + L ++AVD+NG+K+L + L G + LR +D Sbjct: 732 VRAVLERTRQLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVD 791 Query: 122 KLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGGKGGGRPDMAQ 181 LK++L + IVL +V +GKVSLIAGV+ D T +VKAGEL+ VAQQVGGKGGGRPDMAQ Sbjct: 792 DLKNQLGSTVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQ 851 Query: 182 AGGTEPAALPGALQGVAGWVQSKL 205 AGGT+ AALP AL V GWV +KL Sbjct: 852 AGGTDAAALPAALASVQGWVSAKL 875 >VC0545 [J] COG0013 Alanyl-tRNA synthetase Vch Vibrio cholerae Length = 860 Score = 198 bits (503), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 110/204 (53%), Positives = 136/204 (66%), Gaps = 14/204 (6%) Query: 2 TRTGDIGLFKIVSEGGVAAGIRRVEAVTGEGALALVQSLSSRVAEAAAALKTQPEELLPR 61 + TGDIGLFKI+SEGG+AAGIRR+EAVTGEGAL L Q + + Sbjct: 671 SNTGDIGLFKIISEGGIAAGIRRIEAVTGEGALDY--------------LDAQQAQHDAK 716 Query: 62 IGQVQDQVKALEKELASLKSKLASSQGDELVNQAVDINGIKVLAATLEGADVATLRETMD 121 + ++ + K LEKE+ LK KLA+ + L+NQ I G+ VL A L GAD LR +D Sbjct: 717 VSEMAAKAKLLEKEIQQLKDKLAAKESAGLINQVKQIAGVNVLVAQLNGADNKALRGMVD 776 Query: 122 KLKDKLKTAAIVLGSVKDGKVSLIAGVTADATAKVKAGELVNFVAQQVGGKGGGRPDMAQ 181 LK++L + I+LG+V +GKV LIAGVT D T KVKAGELVN VA QVGGKGGGRPDMAQ Sbjct: 777 DLKNQLSSGIIMLGNVAEGKVGLIAGVTNDLTNKVKAGELVNMVALQVGGKGGGRPDMAQ 836 Query: 182 AGGTEPAALPGALQGVAGWVQSKL 205 AGGT+ ALP AL+ V W+ +L Sbjct: 837 AGGTDAHALPSALESVDAWIAERL 860