BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0180.p         (166 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0745 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Rso Ral...   161   6e-40
PA0144 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Pae Pseu...   121   7e-28
PA0145 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Pae Pseu...   119   2e-27
AGl1489 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Atu Agr...    72   6e-13
CC2117 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Ccr Caul...    69   5e-12

>RSc0745 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Rso Ralstonia
           solanacearum
          Length = 161

 Score =  161 bits (408), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/152 (55%), Positives = 101/152 (66%), Gaps = 2/152 (1%)

Query: 6   RIYMAGPDVFQPDYARHKARIKQWCAELGLVALCPGDDEVSGE-DKAEVARRIYEINIAL 64
           R+Y+AGPDVF+P    H   +K  CA  G + L P D+ V+ + D    A  IY  NIAL
Sbjct: 4   RLYLAGPDVFRPQPVAHGDALKALCAAYGFIGLYPFDNAVAPQADGPATAAEIYRQNIAL 63

Query: 65  IDSADYVVANVCDFRGHEPDSGTVFEIGYAVGRGKKVWGYNTPAQDLLSQVPQGAPGYCR 124
           +DSAD V+ANV DFRGHEPDSGT FEIGYA+ RGK VW YN PA  L++QVP    G   
Sbjct: 64  LDSADAVLANVADFRGHEPDSGTCFEIGYAIARGKAVWCYNVPAVPLVAQVPN-VDGSDA 122

Query: 125 QGMLIEDFGLPRNLMLVHAAELVQGDLRDCLQ 156
            G  +EDFGLPRNLML  ++ LV GD R CL+
Sbjct: 123 DGWAVEDFGLPRNLMLACSSRLVAGDARACLE 154


>PA0144 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Pae Pseudomonas
           aeruginosa
          Length = 208

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 96/173 (55%), Gaps = 10/173 (5%)

Query: 2   SAQPR-IYMAGPDVFQPDYARHKARIKQWCAELGLVALCPGDDEVSGE--DKAEVARRIY 58
           +A+PR +Y+AGPDVF+ D   H   +K  CA  G   L P D+ +  +  +  E A  IY
Sbjct: 36  AARPRKLYLAGPDVFRADAVAHGEALKALCARYGFEGLYPLDNALPKQLAEPREQAAWIY 95

Query: 59  EINIALIDSADYVVANVCDFRGHEPDSGTVFEIGYAVGRGKKVWGYNTPAQDLLSQVPQG 118
             NI LI+ AD V+AN+  FRG EPDSGT FE+GYA   GK V+GY   A     ++ + 
Sbjct: 96  RANIGLIERADAVLANLNFFRGAEPDSGTAFEVGYATALGKPVYGYVDDAGSYAERIRRH 155

Query: 119 APGYC-------RQGMLIEDFGLPRNLMLVHAAELVQGDLRDCLQGVARWHAG 164
           AP          R GM +E+FGLP NLML   A LV GD    L+ +A    G
Sbjct: 156 APELIGEDPTRDRDGMTLEEFGLPLNLMLAVPATLVVGDAEQALRQLASRRHG 208


>PA0145 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Pae Pseudomonas
           aeruginosa
          Length = 172

 Score =  119 bits (299), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 94/168 (55%), Gaps = 9/168 (5%)

Query: 7   IYMAGPDVFQPDYARHKARIKQWCAELGLVALCPGDDEVSGE--DKAEVARRIYEINIAL 64
           IY+AGPDVF+PD   H   +K  CAE G V L P D  +  +  + A  A  IY  N+ L
Sbjct: 4   IYLAGPDVFRPDAEAHGETLKALCAEFGFVGLYPLDHALPADIREPAAQAAWIYRANVGL 63

Query: 65  IDSADYVVANVCDFRGHEPDSGTVFEIGYAVGRGKKVWGYNTPAQDLLSQVPQGA----- 119
           I+ AD V+AN+  FRG EPDSGT FE+GYA+  GK V+ Y + A     ++ + A     
Sbjct: 64  IERADCVLANLEPFRGSEPDSGTAFEVGYALALGKPVYAYLSDAGAYAERLARLAPEWLG 123

Query: 120 --PGYCRQGMLIEDFGLPRNLMLVHAAELVQGDLRDCLQGVARWHAGQ 165
             PG  R G  +E FGLP NLML   + LV G  R+ L+ +A    G 
Sbjct: 124 EHPGEDRDGWQLEGFGLPLNLMLAVPSRLVAGGPREALRRLAEELGGN 171


>AGl1489 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 229

 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/158 (34%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 6   RIYMAGPDVFQPDYARHKARIKQWCA-ELGLVALCPGDDEVSGED-KAEVARRIYEINIA 63
           +IY+AGP+VF P+ AR    +K   A E G V L PGD ++   D +      I E++  
Sbjct: 35  KIYLAGPEVFLPN-AREMLDLKASLAREAGFVPLSPGDLQIPPADTRIGHGCNINEVDER 93

Query: 64  LIDSADYVVANVCDFRGHEPDSGTVFEIGYAVGRGKKVWGYNTPAQDLLSQ--------V 115
           ++  AD V+AN+  FRG   D+GT +E+G+    GK V+ Y   A +  ++        V
Sbjct: 94  MMLEADAVIANLTPFRGIAADTGTSYELGFMCALGKPVFAYTNVAANHFTRIKAHYSDVV 153

Query: 116 PQGAPGYCR--QGMLIEDFGLPRNLMLVHAAELVQGDL 151
                G  R   G+ IE+F +  NLML H   L +G L
Sbjct: 154 ALDETGRYRGPDGLSIENFDMVDNLML-HGGILRRGGL 190


>CC2117 [F] COG3613 Nucleoside 2-deoxyribosyltransferase Ccr Caulobacter
           vibrioides
          Length = 186

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 12/146 (8%)

Query: 7   IYMAGPDVFQPDYARHKARIKQWCAELGLVALCPGDDEVSGEDKAEVARRIYEINIALID 66
           +++AGP+ + PD     +R +  C E G  AL P    +S       AR+ Y   +A + 
Sbjct: 7   LWLAGPEAWLPDLDLQTSRQRALCLESGFEALAPARMPISDTGDELEARQFYATRMAQLR 66

Query: 67  SADYVVANVCDFRGHEPDSGTVFEIGYAVGRGKKVWGYNTPAQDLLSQ------------ 114
            AD  V N+  FRG   D+ TVFE G   G GK  + Y     +L ++            
Sbjct: 67  QADAGVINLTPFRGPAADTATVFEAGVLAGLGKPTFAYMNVTSELRAEYVARVDADLGAI 126

Query: 115 VPQGAPGYCRQGMLIEDFGLPRNLML 140
           + +        G +IED GLP  +ML
Sbjct: 127 LDENRVWRDPDGCMIEDHGLPETVML 152