BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0171.p         (230 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0976 [C] COG2180 Nitrate reductase delta subunit Rso Ralstoni...   239   3e-63
BMEII0952 Non COG                                                     142   7e-34
STM1762 [C] COG2180 Nitrate reductase delta subunit Sty Salmonel...   117   3e-26
narJ [C] COG2180 Nitrate reductase delta subunit Eco Escherichia...   112   6e-25
ECs1731 [C] COG2180 Nitrate reductase delta subunit Ecs Escheric...   112   6e-25

>RSp0976 [C] COG2180 Nitrate reductase delta subunit Rso Ralstonia
           solanacearum
          Length = 226

 Score =  239 bits (611), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/221 (59%), Positives = 162/221 (73%), Gaps = 10/221 (4%)

Query: 1   MPQP-IYRILSALLSYPQPELIDALPEISQALQAEPAHQAALQDLLDHLRQTPLLHLQES 59
           M QP +Y +LS LL+YP+PEL+DALPEI + L A P     L  LLD LR T L+ LQE 
Sbjct: 1   MTQPSLYHLLSTLLAYPEPELLDALPEIDRLLSATPDAHRRLAPLLDTLRGTDLITLQEH 60

Query: 60  YVDTFDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELPDYVPLFLEFL 119
           YV TFDR+ + +LHLFEH+HGESRDRGQAMVDL+EEYR++G EP + ELPDYVPLFLE L
Sbjct: 61  YVATFDRNPSHALHLFEHVHGESRDRGQAMVDLIEEYRKYGVEPAANELPDYVPLFLEVL 120

Query: 120 SLLEP----DTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTDIAPRQQDEPPV 175
             ++     + A+ALLG+AIHVLAA+G+RL +  + YA+   +L   +D+ P+   EPP+
Sbjct: 121 GHMDATGHGEQATALLGDAIHVLAAVGERLARDGTSYAAVFDVLLTRSDVQPQPLTEPPI 180

Query: 176 RDMDEAMEVFGPGADGVEPLLRPAMANMNMSGVQPLHFHPR 216
           RDMDEAME FGPGADGVEPLLRPA A       QP+ FHPR
Sbjct: 181 RDMDEAMEHFGPGADGVEPLLRPAPA-----AEQPVQFHPR 216


>BMEII0952 Non COG
          Length = 235

 Score =  142 bits (357), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 4/168 (2%)

Query: 7   RILSALLSYPQPELIDALPEISQALQAE----PAHQAALQDLLDHLRQTPLLHLQESYVD 62
           +I+S LL YP PEL     E+  AL+ E    P  +  L  L+D++    L   QE YV 
Sbjct: 6   KIISLLLFYPSPELQAGRAELKAALEGEKNLSPGVRRLLDKLVDYICTADLYEAQERYVH 65

Query: 63  TFDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELPDYVPLFLEFLSLL 122
            FDR+ +LSLHLFEH+HGESRDRGQAMVDL + Y  +GF+  + ELPDY+PLFLEFLS  
Sbjct: 66  LFDRTRSLSLHLFEHVHGESRDRGQAMVDLGQMYEDNGFDIDAKELPDYLPLFLEFLSTR 125

Query: 123 EPDTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTDIAPRQQ 170
             +    LL +  H+ AA+G+RL++R S YA A   L    +  P ++
Sbjct: 126 STEEIHDLLTQTGHITAAIGERLRKRQSPYAGAFAALLHLANAKPDEK 173


>STM1762 [C] COG2180 Nitrate reductase delta subunit Sty Salmonella
           typhimurium LT2
          Length = 236

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 76/164 (46%), Positives = 96/164 (58%), Gaps = 10/164 (6%)

Query: 8   ILSALLSYP-------QPELIDALPEISQALQAEPAHQAALQDLLDHLRQTPLLHLQESY 60
           I+S LL YP       Q EL DAL   S+ L  E A    +   L  L    LL +Q +Y
Sbjct: 6   IVSRLLEYPDAALWQHQQELFDALAS-SENLDKEDAQTLGV--FLRDLTAQDLLDVQAAY 62

Query: 61  VDTFDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELPDYVPLFLEFLS 120
            + FDR  A SL LFEH+HGESRDRGQAMVDL+ +Y +HG +  S ELPD++PL+LE+L+
Sbjct: 63  SELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLA 122

Query: 121 LLEPDTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTD 164
            L    A   L +   +LA L  RLQQRDS YA    LL +  +
Sbjct: 123 QLPKSEALGGLQDIAPILALLSARLQQRDSRYAVLFDLLLKLAN 166


>narJ [C] COG2180 Nitrate reductase delta subunit Eco Escherichia coli
           K12
          Length = 236

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 10/166 (6%)

Query: 8   ILSALLSYP-------QPELIDALPEISQALQAEPAHQAALQDLLDHLRQTPLLHLQESY 60
           I+S LL YP       Q E+ +A+   S+ L  E AH  AL   L  L     L  Q  Y
Sbjct: 6   IVSRLLEYPDAALWQHQQEMFEAIA-ASKNLPKEDAH--ALGIFLRDLTTMDPLDAQAQY 62

Query: 61  VDTFDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELPDYVPLFLEFLS 120
            + FDR  A SL LFEH+HGESRDRGQAMVDLL +Y +HG +  S ELPD++PL+LE+L+
Sbjct: 63  SELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHGLQLNSRELPDHLPLYLEYLA 122

Query: 121 LLEPDTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTDIA 166
            L    A   L +   +LA L  RLQQR+S YA    LL +  + A
Sbjct: 123 QLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDLLLKLANTA 168


>ECs1731 [C] COG2180 Nitrate reductase delta subunit Ecs Escherichia coli
           O157:H7
          Length = 236

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/166 (45%), Positives = 96/166 (57%), Gaps = 10/166 (6%)

Query: 8   ILSALLSYP-------QPELIDALPEISQALQAEPAHQAALQDLLDHLRQTPLLHLQESY 60
           I+S LL YP       Q E+ +A+   S+ L  E AH  AL   L  L     L  Q  Y
Sbjct: 6   IVSRLLEYPDAALWQHQQEMFEAIA-ASKNLPKEDAH--ALGIFLRDLTTMDPLDAQAQY 62

Query: 61  VDTFDRSHALSLHLFEHIHGESRDRGQAMVDLLEEYRRHGFEPVSAELPDYVPLFLEFLS 120
            + FDR  A SL LFEH+HGESRDRGQAMVDLL +Y +HG +  S ELPD++PL+LE+L+
Sbjct: 63  SELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHGLQLNSRELPDHLPLYLEYLA 122

Query: 121 LLEPDTASALLGEAIHVLAALGQRLQQRDSLYASALLLLTRFTDIA 166
            L    A   L +   +LA L  RLQQR+S YA    LL +  + A
Sbjct: 123 QLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDLLLKLANTA 168