BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0158.p (204 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstoni... 281 9e-76 PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomon... 184 8e-47 VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio ch... 176 2e-44 DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococc... 163 2e-40 XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella f... 158 7e-39 >RSc0714 [H] COG0307 Riboflavin synthase alpha chain Rso Ralstonia solanacearum Length = 217 Score = 281 bits (718), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 146/201 (72%), Positives = 156/201 (77%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIVAAIG I +V PLAA AGVRL I AG LP+ADV LGDSIA+ GACMTVV K Sbjct: 1 MFTGIVAAIGRIETVEPLAADAQAGVRLGIHAGGLPLADVALGDSIAIQGACMTVVAKND 60 Query: 61 NGFTVDVSRESLRLTAGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGES 120 F VDVSRESL T GLD PGEVNLEKAL LA+ +GGHLVSGHVDGLG V F PVGES Sbjct: 61 THFDVDVSRESLSKTVGLDRPGEVNLEKALRLADHIGGHLVSGHVDGLGTVSHFAPVGES 120 Query: 121 RELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEACRFSINLIPHTVEVTTLKHLK 180 EL V LG+Y AYKGS+VVNGVSLTVN V D A C FSINLIPHT+ VTTLKHL Sbjct: 121 YELRVRTSPELGRYFAYKGSVVVNGVSLTVNSVRDDATGCEFSINLIPHTLAVTTLKHLA 180 Query: 181 AGSKVNLEIDLIARYVERMLS 201 G +VNLEIDLIARYVERML+ Sbjct: 181 VGGQVNLEIDLIARYVERMLT 201 >PA4055 [H] COG0307 Riboflavin synthase alpha chain Pae Pseudomonas aeruginosa Length = 219 Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 102/206 (49%), Positives = 134/206 (65%), Gaps = 10/206 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ +IG++ ++TP G D +R+ I G L + DV LGDSIA+NG C+T VE Sbjct: 1 MFTGIIESIGSVRAMTP--KGGD--LRVYIATGKLDLGDVKLGDSIAVNGVCLTAVELPG 56 Query: 61 NGFTVDVSRESLRLTA--GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 +GF DVSRESL TA L VNLEKALT RLGGHLVSGHVDG+G+V E Sbjct: 57 DGFWADVSRESLARTAFQHLKVGSRVNLEKALTPTTRLGGHLVSGHVDGVGEVLKREENA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEACRFSINLIPHTVEVTTLKH 178 + + V AP+ L +Y+A+KGSI V+G SLTVN V F + ++PHT+ T + Sbjct: 117 RAIQFTVRAPRELARYIAHKGSITVDGTSLTVNAV----NGAEFELTIVPHTLSETIMAE 172 Query: 179 LKAGSKVNLEIDLIARYVERMLSASK 204 + G +VNLE+DL+ARY+ER+L K Sbjct: 173 YQPGRRVNLEVDLLARYLERLLLGDK 198 >VC2270 [H] COG0307 Riboflavin synthase alpha chain Vch Vibrio cholerae Length = 217 Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 94/206 (45%), Positives = 132/206 (64%), Gaps = 10/206 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGIV A+G +T++ P G D V +++D G L M DV LGDSIA NG C+TVV Sbjct: 1 MFTGIVEAVGKLTAIIP--KGSD--VTISVDVGKLDMGDVKLGDSIATNGVCLTVVAFDQ 56 Query: 61 NGFTVDVSRESLRLT--AGLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 F+ D+S E+L+ + A VNLEKA+ R GGH+VSGHVDG+G++ PVG Sbjct: 57 RSFSADLSMETLKKSGFAQYQVGDRVNLEKAMLPTTRFGGHIVSGHVDGVGEIVERIPVG 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEACRFSINLIPHTVEVTTLKH 178 + +L V+ P + KY+A KGSI V+G+SLTVN + A F + ++PHT TT+ Sbjct: 117 RAVDLWVNMPAEISKYVAEKGSITVDGISLTVNDLRKNA----FKLTIVPHTSAETTIDE 172 Query: 179 LKAGSKVNLEIDLIARYVERMLSASK 204 + G +VNLE+D++ARY+ER+L + Sbjct: 173 FQVGRRVNLEVDVLARYMERLLQGQQ 198 >DR0154 [H] COG0307 Riboflavin synthase alpha chain Dra Deinococcus radiodurans Length = 214 Score = 163 bits (413), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/208 (46%), Positives = 133/208 (63%), Gaps = 12/208 (5%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ IG +T AA + + +TI A + AD+ LG+SIA G C+TV Sbjct: 1 MFTGIIEQIGRVTH----AAEQNGNLAVTI-APTQMWADLVLGESIACGGTCLTVTGWDE 55 Query: 61 NGFTVDVSRESLRLTA-GLDAPGEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVGE 119 F VD+SRE+L TA +A EVNLE+A+T R GGH+VSGHVDG+G+V Sbjct: 56 QSFCVDLSRETLAKTAPHWEAGQEVNLERAMTAQARFGGHIVSGHVDGVGEVLEVREEPG 115 Query: 120 SRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEAC------RFSINLIPHTVEV 173 + + V AP++L KYL KGS+ V+GVSLT+ V A + F++ L+PHT+EV Sbjct: 116 AYTMRVRAPRSLAKYLTPKGSVTVDGVSLTLVDVGGPAGSRPEWPLDEFTLWLVPHTLEV 175 Query: 174 TTLKHLKAGSKVNLEIDLIARYVERMLS 201 TTLKH +AG++VNLE D +A+YVER+L+ Sbjct: 176 TTLKHWRAGTRVNLEADQVAKYVERLLA 203 >XF0952 [H] COG0307 Riboflavin synthase alpha chain Xfa Xylella fastidiosa 9a5c Length = 200 Score = 158 bits (400), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 97/202 (48%), Positives = 122/202 (60%), Gaps = 10/202 (4%) Query: 1 MFTGIVAAIGTITSVTPLAAGPDAGVRLTIDAGSLPMADVGLGDSIALNGACMTVVEKTA 60 MFTGI+ +G + + + G D VR T + G+LP ++V G+SIA+NG C+TV A Sbjct: 1 MFTGIIGGVGRLAA--RVRQGGD--VRFTFEVGTLPFSEVSYGESIAVNGVCLTVTAFDA 56 Query: 61 NGFTVDVSRESLRLTAGLDAP--GEVNLEKALTLAERLGGHLVSGHVDGLGQVHSFEPVG 118 F D S E+L LT P +NLE+A+ +RLGGHLVSGHVDG+G+V S Sbjct: 57 LCFQADASTETLALTTLGQLPEGATLNLERAMCPTDRLGGHLVSGHVDGIGRVLSVHEDA 116 Query: 119 ESRELIVDAPKALGKYLAYKGSIVVNGVSLTVNRVEDLAEACRFSINLIPHTVEVTTLKH 178 ++ P L KY+A KGSI V+GVSLTVN V AE F + LIPHTV T Sbjct: 117 RAQRWSFAVPVPLLKYVAKKGSICVDGVSLTVNAVN--AEG--FEVALIPHTVAHTRFSR 172 Query: 179 LKAGSKVNLEIDLIARYVERML 200 G VNLEIDLIARYVER+L Sbjct: 173 TVIGEAVNLEIDLIARYVERLL 194