BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0148.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3881 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 159 5e-39 YPO1918 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 142 7e-34 Z1534 [NU] COG3121 P pilus assembly protein, chaperone PapD EcZ ... 130 3e-30 PA2132 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae... 125 8e-29 ECs1276 [NU] COG3121 P pilus assembly protein, chaperone PapD Ec... 119 5e-27 >YPO3881 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 248 Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 95/237 (40%), Positives = 128/237 (54%), Gaps = 16/237 (6%) Query: 2 LLALCAL-VQAQAGVMPERTRLVLSQGVSEVRLRVANTNAYPVMLQSWVDQGEGSQAPDT 60 +L + AL A A V+ ERTR+V S+G +E L++ N+N+YPV +Q WVD G PD Sbjct: 20 VLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDK 79 Query: 61 VVSSMFAMPGVQRLPPQAISAVRLLYTG-DPLPAGRESVFWLNLYEIPVLPADGTAQGSR 119 VS + +P V RL PQA ++RL+ +G LPA RES FWLN+YEIP + S Sbjct: 80 AVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESF 139 Query: 120 VLLGLNTQIKVFYRPPGLPDPDPRWFEALHFRLEREAGQWVLVCRNDSAYYASLAGLQLS 179 V L L Q KVFYRP LP P +AL F LER ++ N + YYAS A L + Sbjct: 140 VTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSALIKVNNPTPYYASFAALTIG 199 Query: 180 DGQAQYTPRQGPDMMAPPFGEMRYPLPRSSVDHAWREAHLRYQLIDDSG----LAHE 232 +GP M PF ++ +PL R+ + + + LIDD G +HE Sbjct: 200 SA-------EGPPEMVAPFSQLDFPLNRAPISD---NKTVNFDLIDDLGNRNSFSHE 246 >YPO1918 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 246 Score = 142 bits (358), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 125/232 (53%), Gaps = 7/232 (3%) Query: 11 AQAGVMPERTRLVLSQGVSEVRLRVANTNAYPVMLQSWVDQGEGSQAPDTVVSSMFAMPG 70 A AG++ TR++ + E L +ANTN YPV++Q+W+D G+ PD + +P Sbjct: 17 ALAGLIAGSTRIIYQPELRERTLMLANTNDYPVVVQTWIDNGDVDSTPDQAKAPFMVLPA 76 Query: 71 VQRLPPQAISAVRLLYTGDPLPAGRESVFWLNLYEIPVLPADGTAQGSRVLLGLNTQIKV 130 V ++ ++ A+R++ G+ LP+ RESV+WLNLYEIP ++V + +NTQ+K+ Sbjct: 77 VFKMQAGSVQALRIINKGENLPSDRESVYWLNLYEIPPRERSNIDVHAQVAMAMNTQMKI 136 Query: 131 FYRPPGLPDPDPRWFEALHFRLEREAGQWVLVCRNDSAYYASLAGLQLSDGQAQYTPRQG 190 FYRP GL P + F L+ Q+V++ N + Y+ S +QL Q Y Q Sbjct: 137 FYRPNGLAPPPIDAMGKIKFSLKNIDNQYVIIANNPTPYFVSFGQIQLQSQQKNYLIAQS 196 Query: 191 PDMMAPPFGEMRYPL--PRSSVDHAWREAHLRYQLIDDSG--LAHEQQVTLA 238 DMM PF Y P +S+ + +++ + DD+G + + Q VT+ Sbjct: 197 MDMMTGPFSTRPYYFEQPPTSLKGKFTVSYIYF---DDAGNQVKNSQSVTVT 245 >Z1534 [NU] COG3121 P pilus assembly protein, chaperone PapD EcZ Escherichia coli O157:H7 EDL933 Length = 229 Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 13/235 (5%) Query: 1 LLLALCALVQAQAGVMPERTRLVLSQGVSEVRLRVANTNAYPVMLQSWVDQGEGSQAPDT 60 LLL + + +AG+MP +R++ G E L + NTN YPV++QSWVD GEGS P+ Sbjct: 6 LLLTILFVQSVEAGIMPASSRIIYRDGDREKTLMLVNTNDYPVLVQSWVDNGEGS--PEA 63 Query: 61 VVSSMFAMPGVQRLPPQAISAVRLLYTGDPLPAGRESVFWLNLYEIPVLPADGTAQGSRV 120 +P V RL + +R++Y DPLP RES FWLNLYE+P P + + Sbjct: 64 ASPPFVVLPPVFRLAARRTQGLRIIYNHDPLPQDRESAFWLNLYEMP--PETPHQDPTHL 121 Query: 121 LLGLNTQIKVFYRPPGLPDPDPRWFEALHFRLEREAGQWVLVCRNDSAYYASLAGLQLSD 180 L +NTQ+K+FYRP + + + L + + N + S + + Sbjct: 122 TLAMNTQLKIFYRPKSVTMTPQEAMRKISWHLGNDGSSSYIELNNPTPLNISFTSISIGA 181 Query: 181 GQAQYTPRQGPDMMAPPFGEMRYPLPRSSVDHAWREAHLRYQLIDDSGLAHEQQV 235 + Q Q DMM PF + RY L ++V +L DD+G +QQ+ Sbjct: 182 TKVQ----QESDMMIKPFSQRRYWLASNNVSGVVAATYL-----DDNGAQIKQQL 227 >PA2132 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae Pseudomonas aeruginosa Length = 237 Score = 125 bits (314), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 117/227 (51%), Gaps = 9/227 (3%) Query: 11 AQAGVMPERTRLVLSQGVSEVRLRVANTNAYPVMLQSWVDQGEGSQAPDTVVSSMFAMPG 70 ++AGV ERTRLV +G E L + N N YPV++Q+WVD G PDT ++ +P Sbjct: 19 SEAGVTAERTRLVFVEGQREASLLLVNQNPYPVLVQAWVDDGALDGEPDTALAPFLPLPP 78 Query: 71 VQRLPPQAISAVRLLYTGDPLPAGRESVFWLNLYEIPVLPADGTAQGSRVLLGLNTQIKV 130 V RL P ++RLL TG RES++WLN+YEIP A R+ + L TQ+KV Sbjct: 79 VFRLEPGRQRSLRLLATGQAQARDRESLYWLNIYEIPPQATAEAAGRPRLTVTLRTQMKV 138 Query: 131 FYRPPGLPDPDPRWFEALHFRLEREAGQWVLVCRNDSAYYASLAGLQLSDGQAQYTPRQG 190 YRP GL L F L E L N + Y+ SLAGL L G+ + Sbjct: 139 LYRPHGLHPHAEDAAAELGFALRDE----TLRVDNPTPYFVSLAGLALEIGETRL---DL 191 Query: 191 PDMMAPPFGEMRYPLPRSSVDHAWREAHLRYQLIDDSGLAHEQQVTL 237 P + P + R LPR VD R + + IDD+G++ +++ L Sbjct: 192 PGTLLAPRSQRRLGLPR-RVDGGTR-GEVAFDWIDDNGVSRQERKAL 236 >ECs1276 [NU] COG3121 P pilus assembly protein, chaperone PapD Ecs Escherichia coli O157:H7 Length = 209 Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 107/220 (48%), Gaps = 13/220 (5%) Query: 16 MPERTRLVLSQGVSEVRLRVANTNAYPVMLQSWVDQGEGSQAPDTVVSSMFAMPGVQRLP 75 MP +R++ G E L + NTN YPV++QSWVD GEGS P+ +P V RL Sbjct: 1 MPASSRIIYRDGDREKTLMLVNTNDYPVLVQSWVDNGEGS--PEAASPPFVVLPPVFRLA 58 Query: 76 PQAISAVRLLYTGDPLPAGRESVFWLNLYEIPVLPADGTAQGSRVLLGLNTQIKVFYRPP 135 + +R++Y DPLP RES FWLNLYE+P P + + L +NTQ+K+FYRP Sbjct: 59 ARRTQGLRIIYNHDPLPQDRESAFWLNLYEMP--PETPHQDPTHLTLAMNTQLKIFYRPK 116 Query: 136 GLPDPDPRWFEALHFRLEREAGQWVLVCRNDSAYYASLAGLQLSDGQAQYTPRQGPDMMA 195 + + + L + + N + S + + + Q Q DMM Sbjct: 117 SVTMTPQEAMRKISWHLGNDGSSSYIELNNPTPLNISFTSISIGATKVQ----QESDMMI 172 Query: 196 PPFGEMRYPLPRSSVDHAWREAHLRYQLIDDSGLAHEQQV 235 PF + RY L ++V +L DD+G +QQ+ Sbjct: 173 KPFSQRRYWLASNNVSGVVAATYL-----DDNGAQIKQQL 207