BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0145.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 166 6e-41 YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 147 2e-35 PA2129 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae... 146 3e-35 YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 139 4e-33 ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ec... 134 2e-31 >YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 243 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 6/227 (2%) Query: 5 LIMVLVFMARTDACASVTMLGTRVIYPAAASEQALRFSNPDEHPNLVQVWLDDGRAGSDH 64 + +LV M+ + A ASV M G+R+IYPAAASE +++ +N D PN VQVWLD G S Sbjct: 13 FVTLLVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGDEKSTP 72 Query: 65 ASASS-FLVLPPVFRMEPHSGQVVRLSYVGAPLPADRESLFFLNFLQVPALKAASVDDNQ 123 + + F+V PP FR+E +SGQ +RL Y G+ LP DRES+F+LNFLQ+P + D+ Sbjct: 73 ETGKAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVEKDNKM 132 Query: 124 LVLTVRSRMKLFYRPPGLDNEADAARAPEALSFSVDASADAASVVAHNASGYHLVIQQAV 183 LVL +R+R+K+FYRP + D + AL+FS+ + N +G++ I Sbjct: 133 LVL-LRNRIKVFYRPESIIGRVD--QVSTALTFSLRKQGTNLVLTGKNPTGFYATIASGE 189 Query: 184 LMLGGKNQELARATVIAPFQQLRWPLAYRPADLSAVRLQLRILNDVG 230 ++ G ++ ++ +IAP Q+ W + SA + I+ND G Sbjct: 190 IVSGSIKLKV-KSNMIAPMSQVEWVIPNASVSSSAT-INFLIMNDFG 234 >YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 259 Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 133/233 (57%), Gaps = 7/233 (3%) Query: 6 IMVLVF---MARTDACASVTMLGTRVIYPAAASEQALRFSNPDEHPNLVQVWLDDGRAGS 62 I++LV ++ A A++T+ GTRVI+PAA E ++R +N P LVQVW+DDG+ + Sbjct: 11 IIILVLSLTISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNA 70 Query: 63 DHASAS-SFLVLPPVFRMEPHSGQVVRLSYVGAPLPADRESLFFLNFLQVPALKAASVDD 121 + S F+V PPVFR+EP GQ VR+ Y G LP ++ES+F+ N L++PA+K Sbjct: 71 NINSMKLPFMVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQ 130 Query: 122 NQLVLTVRSRMKLFYRPPGLDNEADAARAPEALSFSVDASADAASVVAHNASGYHLVIQQ 181 N+L L R+R+K+FYRP L++ + A A + VD + V N + Y++ Sbjct: 131 NKLELAFRTRIKVFYRPTSLESNSAAQSAQLKWTL-VDDNQKGRGVKVVNPTPYYISFDS 189 Query: 182 AVLMLGGKNQELARATVIAPF-QQLRWPLAYRPADLSAVRLQLRILNDVGVEV 233 + +G K+ E+ ++ PF +++ +P S ++ +ILND G + Sbjct: 190 GSITVGAKSVEII-TDMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAI 241 >PA2129 [NU] COG3121 P pilus assembly protein, chaperone PapD Pae Pseudomonas aeruginosa Length = 248 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 87/219 (39%), Positives = 120/219 (54%), Gaps = 5/219 (2%) Query: 17 ACASVTMLGTRVIYPAAASEQALRFSNPDEHPNLVQVWLD-DGRAGSDHASASSFLVLPP 75 A ASV + GTRVIYP A E+ ++ SN D PN+VQ W+D D + + FLV P Sbjct: 25 ARASVVVTGTRVIYPGEAREKTVQLSNRDAFPNVVQAWVDIDAPDAPPDQADAPFLVNPA 84 Query: 76 VFRMEPHSGQVVRLSYVGAPLPADRESLFFLNFLQVPALKAASVDDNQLVLTVRSRMKLF 135 VFRM P SGQ +R+ Y G LP DRESLF LN LQ+P ++ D NQ++L +R+R+KLF Sbjct: 85 VFRMAPDSGQTLRIVYTGQGLPGDRESLFHLNVLQIPPRNSSHADRNQMLLMLRNRLKLF 144 Query: 136 YRPPGLDNEADAARAPEALSFSVDASADAASVVAHNASGYHLVIQQAVLMLGGKNQELAR 195 YRP G+ + P L F++ + +V N SGY+ A L +G + L R Sbjct: 145 YRPAGIQGRPED--LPGQLRFALVRRSAGWAVRVDNPSGYYASFASATLSVGQRRWRL-R 201 Query: 196 ATVIAPFQQLRWPLAYRPA-DLSAVRLQLRILNDVGVEV 233 + ++ P W R A VRL ++ND G + Sbjct: 202 SGMLEPRSHAEWQAETREALPPGRVRLHALLINDYGAHM 240 >YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 214 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 82/232 (35%), Positives = 121/232 (52%), Gaps = 41/232 (17%) Query: 7 MVLVFMARTDACASVTMLGTRVIYPAAASEQALRFSNPDEHPNLVQVWLDDGRAGSDHAS 66 M+L+ ASV M GTR+IYP + E+ L+ SN D+HPNLVQ+W+DDG S + Sbjct: 13 MLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQSSPSK 72 Query: 67 AS-SFLVLPPVFRMEPHSGQVVRLSYVGAPLPADRESLFFLNFLQVPALKAASVDDNQLV 125 + F + P +FRME +SGQVVRL+Y+ LP +RES+F+LNFLQ+PALKA ++ Sbjct: 73 SDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLG----- 127 Query: 126 LTVRSRMKLFYRPPGLDNEADAARAPEALSFSVDASADAASVVAHNASGYHLVIQQAVLM 185 E +S ++D + + HN +GY++ ++ A ++ Sbjct: 128 --------------------------EKISVTLDTTT-GNKIKVHNPTGYYISLRDAKIV 160 Query: 186 LGGKNQELARATVIAPFQQLRWPLAYRPADLSAVRLQLRILNDVGVEVVRDY 237 GK A + + AP L P + A + +L ILN VV DY Sbjct: 161 SNGKTVSFATSEMFAPDSTTDLAL---PIGIKAKKGELLILN-----VVNDY 204 >ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ecs Escherichia coli O157:H7 Length = 241 Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 123/231 (53%), Gaps = 10/231 (4%) Query: 6 IMVLVFMARTDACASVTMLGTRVIYPAAASEQALRFSNPDEHPNLVQVWLDDGRAGSDHA 65 + V +A A A + + GTR+IY A + +R N P L+Q WLD G +D + Sbjct: 12 LFVSTLLASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTGDDNADPS 71 Query: 66 SAS-SFLVLPPVFRMEPHSGQVVRLSYVGAP-LPADRESLFFLNFLQVPAL-KAASVDDN 122 F PPV R+EP GQ V++ Y GA LP DRES+++ N L+VP K A D N Sbjct: 72 QIKVPFTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKN 131 Query: 123 QLVLTVRSRMKLFYRPPGLDNEADAARAPEALSFSVDASADAASVVAHNASGYHLVIQQA 182 L L R+R+KLFYRP GL E A AP +++ + + A + A+N + Y++ + Sbjct: 132 LLQLAFRTRIKLFYRPSGLQGE--PAEAPAKITWKL----NNAQLQANNPTPYYVSFNEV 185 Query: 183 VLMLGGKNQELARATVIAPFQQLRWPLAYRPADLSAVRLQLRILNDVGVEV 233 L GGK + ++++ PF Q + + P +S+ ++ + +ND G + Sbjct: 186 KLESGGKTYNV-NSSMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFGGNI 235