BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0138.p         (229 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cgl1114 [GEPR] COG0477 Permeases of the major facilitator superf...    94   4e-19
mll2542 [GEPR] COG0477 Permeases of the major facilitator superf...    80   3e-15
RSp1417 [GEPR] COG0477 Permeases of the major facilitator superf...    79   6e-15
Cgl1213 [GEPR] COG0477 Permeases of the major facilitator superf...    79   7e-15
mll3424 [GEPR] COG0477 Permeases of the major facilitator superf...    77   2e-14

>Cgl1114 [GEPR] COG0477 Permeases of the major facilitator superfamily Cgl
           Corynebacterium glutamicum
          Length = 449

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 8/131 (6%)

Query: 17  SFGCAMTVLDTNVVGIILPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATADRYGRR 76
           S G  +T+LD ++V + LP +  DLGAS +Q  WV + Y+L FA  LL  G   DRYG+R
Sbjct: 17  SVGLFLTLLDQSLVAVALPKIQEDLGASLNQAVWVSAVYLLTFAVPLLITGRLGDRYGQR 76

Query: 77  RVLLGGIALFALTSLACALAPSAQALYXGAAAWTALGMAVLGSGGGLLNGQTQKAIMGNV 136
            + L G+A+F L +LAC  APS +        W     AV G GG LLN Q    I    
Sbjct: 77  NIYLAGMAVFTLAALACVFAPSIE--------WLIAARAVQGLGGSLLNPQPLSIIHKIF 128

Query: 137 PRERAGMASGI 147
             +R G A+G+
Sbjct: 129 AHDRRGAATGV 139


>mll2542 [GEPR] COG0477 Permeases of the major facilitator superfamily Mlo
           Mesorhizobium loti
          Length = 505

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/130 (36%), Positives = 68/130 (52%), Gaps = 10/130 (7%)

Query: 19  GCAMTVLDTNVVGIILPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATADRYGRRRV 78
           G  + +LD ++V + LPT+ + L   F  ++WVV +Y LC +A +L +G   DRYGR+R 
Sbjct: 15  GTFVALLDVSIVNVALPTIQQALHTDFGGLQWVVDAYTLCLSAFMLSSGLIGDRYGRKRS 74

Query: 79  LLGGIALFALTSLACALAPSAQALYXGAAAWTALGMAVLGSGGGLLNGQTQKAIMGNV-- 136
            L G+ +F   SL CA+AP+  AL  G          V G  G LL       +      
Sbjct: 75  WLAGVGIFVAGSLICAVAPNLPALLAGR--------VVQGIAGSLLIPGALSILTQAFPD 126

Query: 137 PRERAGMASG 146
           PRERAG+  G
Sbjct: 127 PRERAGVIGG 136


>RSp1417 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 467

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/136 (36%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 12  ILLTGSFGCAMTVLDTNVVGIILPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATAD 71
           +L+  S    M +LD  VV      +  DLGAS S ++W +++Y L  AALL+   A  D
Sbjct: 13  VLILTSIATLMAMLDAMVVATATSAIRADLGASLSALQWTMNAYNLSLAALLMTGAALGD 72

Query: 72  RYGRRRVLLGGIALFALTSLACALAPSAQALYXGAAAWTALGMAVLGSGGGLLNGQTQKA 131
           R+GRRRV + G+ +F   S+ACALA SA+        W      V G+GG L+   +   
Sbjct: 73  RFGRRRVFVTGLCVFVAASIACALARSAE--------WLIAARVVQGAGGALVTPLSMAL 124

Query: 132 IMGNVPRERAGMASGI 147
           +    P ER G A G+
Sbjct: 125 LSAAFPPERRGKALGL 140


>Cgl1213 [GEPR] COG0477 Permeases of the major facilitator superfamily Cgl
           Corynebacterium glutamicum
          Length = 487

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 19  GCAMTVLDTNVVGIILPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATADRYGRRRV 78
           G  M +LD  +V +  P +  D+GAS++++ WV S Y+L FA  LL  G   D+YG + V
Sbjct: 43  GFFMILLDQTIVAVSTPALQADMGASYNEVIWVTSVYLLTFAVPLLVTGRLGDKYGPKNV 102

Query: 79  LLGGIALFALTSLACALAPSAQALYXGAAAWTALGMAVLGSGGGLLNGQTQKAIMGNVPR 138
            + G+ +F ++SLAC LAP    L         +   V G G  LL  QT   I      
Sbjct: 103 YVAGMVIFTVSSLACGLAPDMFTLI--------IARGVQGLGAALLTPQTMATINRIFAF 154

Query: 139 ERAGMASGI 147
           ER G A G+
Sbjct: 155 ERRGAALGV 163


>mll3424 [GEPR] COG0477 Permeases of the major facilitator superfamily Mlo
           Mesorhizobium loti
          Length = 524

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/136 (35%), Positives = 76/136 (55%), Gaps = 8/136 (5%)

Query: 12  ILLTGSFGCAMTVLDTNVVGIILPTVARDLGASFSQIEWVVSSYVLCFAALLLPAGATAD 71
           +L+      A+  +D +++ I +P +  +LGAS ++ +W+ ++Y L  +AL+L  GA  D
Sbjct: 30  VLIAAILASALGFIDGSILAIAMPAIRVNLGASLAEAQWISNAYALTLSALILAGGAAGD 89

Query: 72  RYGRRRVLLGGIALFALTSLACALAPSAQALYXGAAAWTALGMAVLGSGGGLLNGQTQKA 131
           R+G RR  + GIALF + SLACALAP+A  L  G  A   +G A++  G       +   
Sbjct: 90  RFGLRRAFVAGIALFIVASLACALAPNAVVLI-GFRALQGIGAAIMVPG-------SLAI 141

Query: 132 IMGNVPRERAGMASGI 147
           I    P++  G A GI
Sbjct: 142 IAKAYPKKERGRAIGI 157