BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0086.p         (202 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...   179   4e-45
BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...   114   1e-25
SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinor...   112   5e-25
PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudo...    89   4e-18
BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacil...    87   2e-17

>PA1677 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 198

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 129/196 (65%), Gaps = 2/196 (1%)

Query: 1   MSTPQTLIQIAGGSPRAATWQEAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARA 60
           M  P TL+QI+G     A  +++ L+IID Q EY +G   L G+ AA AE+ +L++ ARA
Sbjct: 1   MPHPLTLLQISGRGYPPAPLRQSTLLIIDAQEEYRSGALRLPGLDAAAAEIGVLVQAARA 60

Query: 61  AAAPVIHVVHHGKPGGAMFDPQGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKK 120
           +  P++HV H G  GG +FDPQGP    +  +QP+ GE V+ K LPN+F+GT L + L+ 
Sbjct: 61  SGTPIVHVRHLGIQGG-LFDPQGPRGQFLPELQPEAGEKVVEKRLPNAFSGTELHDLLQN 119

Query: 121 TGRKSLIIAGFATHMCVSATVRSALDHGYACTVVAAACATRDLPDPLGGTALSAAEIQRV 180
            GR  LI+ GF TH  VS TVR+A D+GY CT+  +ACATRD+P  L G  LSAA++QR 
Sbjct: 120 HGRLDLIVCGFMTHSSVSTTVRAAKDYGYRCTLADSACATRDIPT-LNGGVLSAADLQRA 178

Query: 181 ALAELADRYATVVAHA 196
            +A L D +A +VA A
Sbjct: 179 EIAALGDNFAAIVAQA 194


>BS_yddQ [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 180

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 69/171 (40%), Positives = 90/171 (52%), Gaps = 4/171 (2%)

Query: 24  ALVIIDHQTEYT-TGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGA-MFDP 81
           AL++ID Q +Y   G+  L     A    A LL H R   APV HV H  +   A  F P
Sbjct: 4   ALLVIDIQNDYFPNGKMALTNPEKAAQNAAKLLSHFRNTGAPVFHVQHITEGNIAHFFHP 63

Query: 82  QGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSATV 141
               V I + V+P   E VI K +PNSF  T L+  L++ G K L++ G  +HMC+ ATV
Sbjct: 64  NTEGVEIHESVRPLEKETVIVKHMPNSFFNTDLNGKLQEEGVKELVVCGMMSHMCIDATV 123

Query: 142 RSALDHGYACTVVAAACATRDLPDPLGGTALSAAEIQRVALAELADRYATV 192
           RSA++HGY C VV  ACAT  L   +    + A  +    +A L   YATV
Sbjct: 124 RSAVEHGYVCQVVEDACATTTL--QIEDKIVPAEHVHYAFMAALNGVYATV 172


>SMa1724 [Q] COG1335 Amidases related to nicotinamidase Sme Sinorhizobium
           meliloti
          Length = 260

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 97/173 (56%), Gaps = 5/173 (2%)

Query: 24  ALVIIDHQTEY-TTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMFDPQ 82
           A++++D Q +Y TTG+ PL GI  A+   A L++ AR +   V+++  H  P GA F   
Sbjct: 84  AIIVVDLQNDYLTTGKFPLVGIDKALENAARLVDAARRSGDLVVNI-RHESPAGAPFFVS 142

Query: 83  GPHVA-IIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSATV 141
           G   A II  + PQ GEAV+TK  PNSF  T L   L   G   + + G  +HMC+ AT 
Sbjct: 143 GTEGAEIIPNIAPQHGEAVVTKRYPNSFRETELASLLSSAGVDEVTVIGAMSHMCIDATA 202

Query: 142 RSALDHGYACTVVAAACATRDLPDPLGGTALSAAEIQRVALAELADRYATVVA 194
           R+A D GY  TVV  ACATRDL     G  + AA++    ++ LA  Y  VV+
Sbjct: 203 RAASDLGYKTTVVEDACATRDL--EFRGEVVPAAKVHAAYMSALAFGYGQVVS 253


>PA3953 [Q] COG1335 Amidases related to nicotinamidase Pae Pseudomonas
           aeruginosa
          Length = 193

 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 86/178 (48%), Gaps = 1/178 (0%)

Query: 22  EAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMFDP 81
           + AL+I+D Q        P      A A +  LL   RAA  PV+HV H  +  G+ F P
Sbjct: 12  QVALLIVDLQRGMQRHDLPPRNNPGAEARIVELLAAWRAAGWPVVHVRHVSRQPGSPFAP 71

Query: 82  QGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSATV 141
             P V     + P+  EAV  K +P++F  + L   L     + + + G AT   V A+ 
Sbjct: 72  GQPGVEFQPALAPRDDEAVFEKNVPDAFINSGLQRWLHVRDIRQVALVGVATENSVEASA 131

Query: 142 RSALDHGYACTVVAAACATRDLPDPLGGTALSAAEIQRVALAELADRYATVVAHAGLL 199
           RSA + G+   VVA AC T   PD   GT  SA E+  +ALA L   YA V+  A LL
Sbjct: 132 RSAGNLGFQTWVVADACFTFAKPD-FHGTPRSADEVHAMALANLHGEYAVVLRAAELL 188


>BS_yrdC [Q] COG1335 Amidases related to nicotinamidase Bsu Bacillus
           subtilis
          Length = 187

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 89/179 (49%), Gaps = 1/179 (0%)

Query: 21  QEAALVIIDHQTEYTTGRAPLAGIGAAVAEVALLLEHARAAAAPVIHVVHHGKPGGAMFD 80
           ++ AL+I+D Q  +   +        A   ++ +LE  R     VI++ H      ++F 
Sbjct: 3   EKKALIIVDVQKAFDDKKWGERNNVKAEENISKILELWREKGWTVIYIQHTSDKPHSLFH 62

Query: 81  PQGPHVAIIDGVQPQPGEAVITKGLPNSFAGTTLDETLKKTGRKSLIIAGFATHMCVSAT 140
           P+    AI + V+P   E +ITK + +SF GT L+E LK     +++I G  T  CVS T
Sbjct: 63  PKNEGFAIKEIVKPMDEEVIITKTVNSSFIGTNLEEFLKLNEITTVVITGLTTPHCVSTT 122

Query: 141 VRSALDHGYACTVVAAACATRDLPDPLGGTALSAAEIQRVALAELADRYATVVAHAGLL 199
            R + + G+   +++ A A   + D    T   AA I  ++LA L D +AT++    L+
Sbjct: 123 TRMSGNLGFDTYLISDATAAFGMRDQ-NDTYYDAATIHNISLATLHDEFATILTTDQLI 180