BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0038.0040.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2719 [C] COG3038 Cytochrome B561 Rso Ralstonia solanacearum        189   3e-48
CC3391_1 [C] COG3038 Cytochrome B561 Ccr Caulobacter vibrioides        94   2e-19
PA0422 [C] COG3038 Cytochrome B561 Pae Pseudomonas aeruginosa          92   4e-19
Z1693 [C] COG3038 Cytochrome B561 EcZ Escherichia coli O157:H7 E...    89   4e-18
ECs1435 [C] COG3038 Cytochrome B561 Ecs Escherichia coli O157:H7       89   4e-18

>RSc2719 [C] COG3038 Cytochrome B561 Rso Ralstonia solanacearum
          Length = 195

 Score =  189 bits (480), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 120/171 (70%)

Query: 4   YTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGLTVLALACARLLW 63
           Y KPA+ LHW+IALLI +AFGLGL M DIPG TPTKLK +S+HKW G+TVL LA  R+LW
Sbjct: 22  YGKPAIALHWIIALLIFAAFGLGLYMTDIPGFTPTKLKLYSYHKWAGITVLILAVLRVLW 81

Query: 64  RLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLPLPV 123
           RLTH APA  A MP WQQ AA G H+ LY L+ A+P++GY  S+AAG+ VVYLG+  LP+
Sbjct: 82  RLTHPAPAPVAGMPAWQQKAAEGAHIVLYLLILAVPLTGYLLSVAAGIKVVYLGLWELPM 141

Query: 124 LMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRILP 174
               +  LK + +  H WLN  +     LH+LAALKH  +D D   +R+LP
Sbjct: 142 PFDKSDALKEIFQVAHEWLNWTMATIVVLHILAALKHHIVDSDGTLRRMLP 192


>CC3391_1 [C] COG3038 Cytochrome B561 Ccr Caulobacter vibrioides
          Length = 287

 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 26/189 (13%)

Query: 3   RYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGLTVLALACARLL 62
           RYT  A++LHWLIA  II    LG    D P   PT       HK +G+T+L L+ ARL 
Sbjct: 7   RYTTVAIVLHWLIAAAIIFQIILGWRAEDGPK-GPTTFALMQLHKSIGITILLLSLARLG 65

Query: 63  WRLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYF--YSLAAGVPVVYLGVLP 120
           WRL + AP  P   P+W+Q+A+  +H+G Y +M  +P++G+    +    +P +  G +P
Sbjct: 66  WRLVNPAPPAPVGQPRWEQTASKIVHIGFYVIMIGLPLTGWILVSTSRTNLPTLLFGAIP 125

Query: 121 LPVLMAPNPELKPLLKE-----THYWLNMILLGA----------FALHVLAALKHQFIDR 165
            P L        PLL E      H W  +  +G            ALH+ A  KHQ +D+
Sbjct: 126 WPHL--------PLLPELAAGPKHLWHEIGEIGHNVLVKTTYLLLALHLGAVAKHQILDK 177

Query: 166 DNIFKRILP 174
           D +F+ + P
Sbjct: 178 DAVFQNMAP 186


>PA0422 [C] COG3038 Cytochrome B561 Pae Pseudomonas aeruginosa
          Length = 189

 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 59/172 (34%), Positives = 87/172 (50%)

Query: 2   DRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGLTVLALACARL 61
            RY   ++ LHW  AL++   FGLGL M ++    P      + HK +G+ +      R+
Sbjct: 8   SRYGVFSLFLHWGSALVVFGLFGLGLWMRELSYYDPWYHPAPALHKSIGILLAIALLVRI 67

Query: 62  LWRLTHRAPAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLPL 121
           +WR     P  PA+     + A+   HL LY L+ A+ V+GY  S A G P+   G   +
Sbjct: 68  VWRFVSPPPPAPANHGPLTRVASKLGHLALYGLLLAVIVAGYLISTADGEPISVFGWFSV 127

Query: 122 PVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRIL 173
           P  ++  P+   +  E H +L   L+    LH LAALKH F+DRD   KR+L
Sbjct: 128 PATLSGLPDQADVAGEIHLYLAWALVVFAVLHALAALKHHFVDRDPTLKRML 179


>Z1693 [C] COG3038 Cytochrome B561 EcZ Escherichia coli O157:H7 EDL933
          Length = 188

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 2/173 (1%)

Query: 2   DRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGLTVLALACARL 61
           +RY   +   HWL A+++   F LGL MV +        K    HK +G+ ++     R+
Sbjct: 8   ERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLMMGLVIRV 67

Query: 62  LWRLTHRAPA-YPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLP 120
           LWR+    P   P++ P  + +A  G HL LY L+FAI +SGY  S A G P+   G   
Sbjct: 68  LWRVISPPPGPLPSYSPMTRLAAKAG-HLALYLLLFAIGISGYLISTADGKPISVFGWFD 126

Query: 121 LPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRIL 173
           +P  +A            H+WL   ++    +H   ALKH FID+D+  KR+L
Sbjct: 127 VPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRML 179


>ECs1435 [C] COG3038 Cytochrome B561 Ecs Escherichia coli O157:H7
          Length = 188

 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 2/173 (1%)

Query: 2   DRYTKPAMLLHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGLTVLALACARL 61
           +RY   +   HWL A+++   F LGL MV +        K    HK +G+ ++     R+
Sbjct: 8   ERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGWYHKAPELHKSIGILLMMGLVIRV 67

Query: 62  LWRLTHRAPA-YPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLP 120
           LWR+    P   P++ P  + +A  G HL LY L+FAI +SGY  S A G P+   G   
Sbjct: 68  LWRVISPPPGPLPSYSPMTRLAAKAG-HLALYLLLFAIGISGYLISTADGKPISVFGWFD 126

Query: 121 LPVLMAPNPELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRIL 173
           +P  +A            H+WL   ++    +H   ALKH FID+D+  KR+L
Sbjct: 127 VPATLADAGAQADFAGALHFWLAWSVVVLSVMHGFMALKHHFIDKDDTLKRML 179