BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0038.0032.p (249 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3350 [M] COG3047 Outer membrane protein W Rso Ralstonia solan... 187 1e-47 VCA0867 [M] COG3047 Outer membrane protein W Vch Vibrio cholerae 104 2e-22 ompW [M] COG3047 Outer membrane protein W Eco Escherichia coli K12 94 4e-19 ZyciD [M] COG3047 Outer membrane protein W EcZ Escherichia coli ... 92 1e-18 ECs1756 [M] COG3047 Outer membrane protein W Ecs Escherichia col... 92 1e-18 >RSc3350 [M] COG3047 Outer membrane protein W Rso Ralstonia solanacearum Length = 241 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 151/235 (64%), Gaps = 13/235 (5%) Query: 20 FAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGP----IPGSGSTVKNADTLG 75 A AQ+AGSNIV++GWF + P SS+ L + D G P +P +G+ +K+ADTLG Sbjct: 15 LATAAHAQSAGSNIVSLGWFRVMPNSSSDPL-QIDSVGGVPLNRSVPNTGAKIKDADTLG 73 Query: 76 IAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHFGDANSAF 135 +AFTHF TDN+++ GIPP K+ GT A G+IG AKQWSP ++AK++FG A+S F Sbjct: 74 LAFTHFFTDNLAVELVGGIPPRHKIEGTDSFARYGQIGSAKQWSPTVLAKWYFGGADSKF 133 Query: 136 RPFVGAGVTYVWYDNVELTDN-FQRTISSKYTNGAVTSAKSSASLSSSWAPVLTVGGNYN 194 RP+VGAG+ Y W+ + ++T++ FQ + NG +++ S S + PV++ G Y Sbjct: 134 RPYVGAGLNYTWFTDEKITNSAFQTQV---LGNGFPSTSTVSTDSSLN--PVVSAGATYA 188 Query: 195 FNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGYKF 249 K+W +GLSVSY+PLKT A I T L G + + INPIVTFLSVGY+F Sbjct: 189 ITKDWFLGLSVSYLPLKTTAKIDTTLA--NGQHAVTEAKIKINPIVTFLSVGYRF 241 >VCA0867 [M] COG3047 Outer membrane protein W Vch Vibrio cholerae Length = 217 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 30/241 (12%) Query: 11 IAALSVMAAFA-APVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGSGSTVK 69 I L+V+AA + APV A G IV G + P DSS+ + A V Sbjct: 5 ICGLAVLAALSSAPVFAHQEGDFIVRAGIASVVPNDSSDKVLNTQSELA---------VN 55 Query: 70 NADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTG-ILAGVGEIGKAKQWSPAIVAKYHF 128 + LG+ + TDN+S P + K++ +G L +G+IG+ K P + +Y+F Sbjct: 56 SNTQLGLTLGYMFTDNISFEVLAATPFSHKISTSGGELGSLGDIGETKHLPPTFMVQYYF 115 Query: 129 GDANSAFRPFVGAGVTYVWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPVLT 188 G+ANS FRP+VGAG+ Y + F + + TN ++ K L SW Sbjct: 116 GEANSTFRPYVGAGLNYTTF--------FDESFNGTGTNAGLSDLK----LDDSWGLAAN 163 Query: 189 VGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGYK 248 VG +Y N +W + SV Y ++T A G ST + INP V ++ GYK Sbjct: 164 VGFDYMLNDSWFLNASVWYANIETTA-------TYKAGADAKSTDVEINPWVFMIAGGYK 216 Query: 249 F 249 F Sbjct: 217 F 217 >ompW [M] COG3047 Outer membrane protein W Eco Escherichia coli K12 Length = 212 Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 109/242 (45%), Gaps = 38/242 (15%) Query: 11 IAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGS--GSTV 68 +AAL+V + A AG + G + P + GAG GS G +V Sbjct: 6 VAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTE-----------GAGGTLGSLGGFSV 54 Query: 69 KNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHF 128 N LG+ FT+ TDN+ + P K+ GT G+I P ++A+++F Sbjct: 55 TNNTQLGLTFTYMATDNIGVELLAATPFRHKI-GT---RATGDIATVHHLPPTLMAQWYF 110 Query: 129 GDANSAFRPFVGAGVTY-VWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPVL 187 GDA+S FRP+VGAG+ Y ++DN + + + S SL SW Sbjct: 111 GDASSKFRPYVGAGINYTTFFDN-------------GFNDHGKEAGLSDLSLKDSWGAAG 157 Query: 188 TVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGY 247 VG +Y N++W V +SV Y+ + T A+ L G H S L +P V S GY Sbjct: 158 QVGVDYLINRDWLVNMSVWYMDIDTTANY-----KLGGAQQHDSVRL--DPWVFMFSAGY 210 Query: 248 KF 249 +F Sbjct: 211 RF 212 >ZyciD [M] COG3047 Outer membrane protein W EcZ Escherichia coli O157:H7 EDL933 Length = 212 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 38/242 (15%) Query: 11 IAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGS--GSTV 68 +AAL+V + A AG + G + P + GAG GS G +V Sbjct: 6 VAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTE-----------GAGGTLGSLGGFSV 54 Query: 69 KNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHF 128 N LG+ FT+ TDN+ + P K+ GT G+I P ++A+++F Sbjct: 55 TNNTQLGLTFTYMATDNIGVELLAATPFRHKI-GT---RATGDIATVHHLPPTLMAQWYF 110 Query: 129 GDANSAFRPFVGAGVTY-VWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPVL 187 GDA+S FRP+VGAG+ Y ++DN + + + S SL SW Sbjct: 111 GDASSKFRPYVGAGINYTTFFDN-------------GFNDHGKEAGLSDLSLKDSWGAAG 157 Query: 188 TVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGY 247 VG +Y N++W V +SV Y+ + T A + G T S+ ++P V S GY Sbjct: 158 QVGVDYLINRDWLVNMSVWYMDIDTTAKYKS-------GVTTVKDSVRLDPWVFMFSAGY 210 Query: 248 KF 249 +F Sbjct: 211 RF 212 >ECs1756 [M] COG3047 Outer membrane protein W Ecs Escherichia coli O157:H7 Length = 212 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 72/242 (29%), Positives = 109/242 (45%), Gaps = 38/242 (15%) Query: 11 IAALSVMAAFAAPVMAQTAGSNIVNVGWFHLAPQDSSEILTKNDGPGAGPIPGS--GSTV 68 +AAL+V + A AG + G + P + GAG GS G +V Sbjct: 6 VAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTE-----------GAGGTLGSLGGFSV 54 Query: 69 KNADTLGIAFTHFLTDNVSLTADLGIPPTFKLNGTGILAGVGEIGKAKQWSPAIVAKYHF 128 N LG+ FT+ TDN+ + P K+ GT G+I P ++A+++F Sbjct: 55 TNNTQLGLTFTYMATDNIGVELLAATPFRHKI-GT---RATGDIATVHHLPPTLMAQWYF 110 Query: 129 GDANSAFRPFVGAGVTY-VWYDNVELTDNFQRTISSKYTNGAVTSAKSSASLSSSWAPVL 187 GDA+S FRP+VGAG+ Y ++DN + + + S SL SW Sbjct: 111 GDASSKFRPYVGAGINYTTFFDN-------------GFNDHGKEAGLSDLSLKDSWGAAG 157 Query: 188 TVGGNYNFNKNWSVGLSVSYIPLKTNADITTELPALAGGTTHSSTSLTINPIVTFLSVGY 247 VG +Y N++W V +SV Y+ + T A + G T S+ ++P V S GY Sbjct: 158 QVGVDYLINRDWLVNMSVWYMDIDTTAKYKS-------GVTTVKDSVRLDPWVFMFSAGY 210 Query: 248 KF 249 +F Sbjct: 211 RF 212